Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30233
(712 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 36 0.038
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 36 0.038
AF100656-5|AAF99963.2| 259|Caenorhabditis elegans Hypothetical ... 32 0.35
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 31 1.1
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 30 1.9
U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated p... 29 4.3
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical pr... 28 7.6
AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans Prion-like-(q... 28 7.6
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 35.5 bits (78), Expect = 0.038
Identities = 37/162 (22%), Positives = 58/162 (35%), Gaps = 3/162 (1%)
Frame = +3
Query: 102 DNKRSNFGARSQTASSAFRLLPPGGHADHSSPHRPDGL--RSGRCNSIIHIHNTT-TKPP 272
D + + + S F + G ADH+ PH+ + L + R S + PP
Sbjct: 1690 DQQHEKMNSTGRRLSDMFSKIRRGTSADHN-PHQTEHLLAQDNRSPSSPRYRSMARASPP 1748
Query: 273 ELTTRPHKPGFYAPSSPPSVTDRFNHYWQRFILLPLEQATQYTVIRPQEPKTEASLLSIH 452
R P Y SPPS + Q I P+ + +Y + + H
Sbjct: 1749 SPAERYGHPPRYRTESPPSSRSEY----QMSIRDPIIRRNRYNTMEHSRSSHDPQY---H 1801
Query: 453 QEQVQPLVEPRPQHQNLLPHTKSKSRAGSDGFVIDEDLTDDS 578
Q+Q Q QH L H+ K+ + + +DDS
Sbjct: 1802 QDQQQQQQPHHQQHSQHLQHSHHKTYQNHNQYSRSPIYSDDS 1843
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 35.5 bits (78), Expect = 0.038
Identities = 37/162 (22%), Positives = 58/162 (35%), Gaps = 3/162 (1%)
Frame = +3
Query: 102 DNKRSNFGARSQTASSAFRLLPPGGHADHSSPHRPDGL--RSGRCNSIIHIHNTT-TKPP 272
D + + + S F + G ADH+ PH+ + L + R S + PP
Sbjct: 1690 DQQHEKMNSTGRRLSDMFSKIRRGTSADHN-PHQTEHLLAQDNRSPSSPRYRSMARASPP 1748
Query: 273 ELTTRPHKPGFYAPSSPPSVTDRFNHYWQRFILLPLEQATQYTVIRPQEPKTEASLLSIH 452
R P Y SPPS + Q I P+ + +Y + + H
Sbjct: 1749 SPAERYGHPPRYRTESPPSSRSEY----QMSIRDPIIRRNRYNTMEHSRSSHDPQY---H 1801
Query: 453 QEQVQPLVEPRPQHQNLLPHTKSKSRAGSDGFVIDEDLTDDS 578
Q+Q Q QH L H+ K+ + + +DDS
Sbjct: 1802 QDQQQQQQPHHQQHSQHLQHSHHKTYQNHNQYSRSPIYSDDS 1843
>AF100656-5|AAF99963.2| 259|Caenorhabditis elegans Hypothetical
protein F49F1.6 protein.
Length = 259
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +1
Query: 394 STLSSDRKSPRQKPHCFPSIKNRSSLWLNQDLNTKIFCP 510
STL+ R SP P CF S ++ L D+N KIFCP
Sbjct: 133 STLAPPRPSPT--PPCFDSGNECATYTLPCDVNQKIFCP 169
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Frame = +3
Query: 168 PGGHADHSSPHRP--DGLRSGRCNSIIHIHNTTTKPPELTTRPHKPGFYAPSSPP 326
PG H H PH DG R H H+ P H P F+ P PP
Sbjct: 391 PGRHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRPFPPHHGHHHFPPFWPPCPPP 445
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 29.9 bits (64), Expect = 1.9
Identities = 42/173 (24%), Positives = 65/173 (37%), Gaps = 14/173 (8%)
Frame = +3
Query: 102 DNKRSNFGARSQTASSAFRLLPPGGHADHSSPHRPDGLRSGRCNSIIHIHNTTTKPPELT 281
D + + + S F + G ADH+ PH+ R G + ++ T
Sbjct: 1571 DQQHEKMNSTGRRLSDMFSKIRRGTSADHN-PHQNYSHRFGYSRNRGSRYDETEHLLAQD 1629
Query: 282 TR-PHKPGF--YAPSSPPSVTDRFNHYWQRFILLPLEQATQYT------VIRPQEPKT-E 431
R P P + A +SPPS +R+ H + P ++Y +IR T E
Sbjct: 1630 NRSPSSPRYRSMARASPPSPAERYGHPPRYRTESPPSSRSEYQMSIRDPIIRRNRYNTME 1689
Query: 432 ASLLS----IHQEQVQPLVEPRPQHQNLLPHTKSKSRAGSDGFVIDEDLTDDS 578
S S HQ+Q Q QH L H+ K+ + + +DDS
Sbjct: 1690 HSRSSHDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNHNQYSRSPIYSDDS 1742
>U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated
protein 2, isoform d protein.
Length = 286
Score = 28.7 bits (61), Expect = 4.3
Identities = 25/104 (24%), Positives = 37/104 (35%)
Frame = +3
Query: 267 PPELTTRPHKPGFYAPSSPPSVTDRFNHYWQRFILLPLEQATQYTVIRPQEPKTEASLLS 446
PP R P Y SPPS + Q I P+ + +Y + +
Sbjct: 6 PPSPAERYGHPPRYRTESPPSSRSEY----QMSIRDPIIRRNRYNTMEHSRSSHDPQY-- 59
Query: 447 IHQEQVQPLVEPRPQHQNLLPHTKSKSRAGSDGFVIDEDLTDDS 578
HQ+Q Q QH L H+ K+ + + +DDS
Sbjct: 60 -HQDQQQQQQPHHQQHSQHLQHSHHKTYQNHNQYSRSPIYSDDS 102
>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
protein F29G6.3c protein.
Length = 1453
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 280 QHVPTNQDSTRRHHHQASQTDSTITGN 360
QH T+ D HHH S T T N
Sbjct: 355 QHSITHHDHDHHHHHHESHVTHTFTSN 381
>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
protein F29G6.3b protein.
Length = 1785
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 280 QHVPTNQDSTRRHHHQASQTDSTITGN 360
QH T+ D HHH S T T N
Sbjct: 355 QHSITHHDHDHHHHHHESHVTHTFTSN 381
>Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical
protein F29G6.3a protein.
Length = 772
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 280 QHVPTNQDSTRRHHHQASQTDSTITGN 360
QH T+ D HHH S T T N
Sbjct: 355 QHSITHHDHDHHHHHHESHVTHTFTSN 381
>AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform a protein.
Length = 1128
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 315 SSPPSVTDRFNHYWQRFILLPLEQATQYTVIRPQEPKTEASLLSIHQEQVQPLVEPRPQH 494
SS PSV Y ++ LP+ A Q T Q P+T Q+Q+Q + + Q
Sbjct: 499 SSQPSVVQAGQTYPANYMTLPMNAAAQMTQSYIQHPQTPHDYYM--QQQMQQQQQQQAQA 556
Query: 495 QN 500
Q+
Sbjct: 557 QS 558
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,965,751
Number of Sequences: 27780
Number of extensions: 384246
Number of successful extensions: 1283
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -