Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30233
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   0.71 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.8  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              22   6.6  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   6.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.7  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 607 PSRPSVKYCKLSSVRSSSI 551
           PS PS+    LSSVR SSI
Sbjct: 335 PSNPSITRTGLSSVRDSSI 353


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 461  GPAFG*TKTSTPKSSAPYEVKISSRV 538
            G   G  +   P+S+A YEV I S++
Sbjct: 1222 GRLLGFWRVEMPRSNADYEVCIGSQI 1247


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 518 LRMGQKILVLRSWFNQRLDLFLMDGK 441
           +RMGQ I + ++  N+++   + DGK
Sbjct: 26  IRMGQSICMAKTGINKQIINDVNDGK 51


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 192 SPHRPDGLRSGRCNSIIHIHNTTTKPP 272
           S H  +G+ +G   SII I  T   PP
Sbjct: 77  SSHSSNGIHTGFGGSIITIPPTRKLPP 103


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 178 MQIIAHLTDQMAFEVD 225
           M+ ++H TD+M F+ D
Sbjct: 181 MESLSHTTDEMIFQWD 196


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 236 HHPYPQHNHKATRTHN 283
           HHP   H H+ +  H+
Sbjct: 321 HHPSQYHPHRGSSPHH 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,870
Number of Sequences: 438
Number of extensions: 4249
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)