Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30233
(712 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62570.1 68416.m07029 DNAJ heat shock N-terminal domain-conta... 30 1.3
At1g70820.1 68414.m08169 phosphoglucomutase, putative / glucose ... 30 1.3
At1g52560.1 68414.m05933 26.5 kDa class I small heat shock prote... 29 2.3
At3g47620.1 68416.m05184 TCP family transcription factor, putati... 29 3.0
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot... 29 3.0
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa... 24 3.6
At3g01750.1 68416.m00112 ankyrin repeat family protein contains ... 29 4.0
At2g35910.1 68415.m04408 zinc finger (C3HC4-type RING finger) fa... 29 4.0
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 29 4.0
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 29 4.0
At1g03630.1 68414.m00343 protochlorophyllide reductase C, chloro... 28 5.3
At5g38560.1 68418.m04662 protein kinase family protein contains ... 28 7.0
At5g03490.1 68418.m00305 UDP-glucoronosyl/UDP-glucosyl transfera... 28 7.0
At3g22380.1 68416.m02825 expressed protein 28 7.0
At3g16785.1 68416.m02143 phospholipase D zeta1 / PLDzeta1 (PLDP1... 28 7.0
At5g18560.1 68418.m02194 AP2 domain-containing transcription fac... 27 9.3
At4g08370.1 68417.m01382 proline-rich extensin-like family prote... 27 9.3
At1g60220.1 68414.m06782 Ulp1 protease family protein contains P... 27 9.3
>At3g62570.1 68416.m07029 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profiles
PF00226: DnaJ domain, PF00515: TPR Domain
Length = 552
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 498 NLLPHTKSKSRAGSDGF-VIDEDLTDDSLQYLTDGREGTNQDRPQSW 635
NLL HTK+ R S GF D L DS+++ + +G + PQ +
Sbjct: 232 NLLAHTKNLLRRRSAGFAAFDAGLFADSIRHFSKILDGRRRPAPQGF 278
>At1g70820.1 68414.m08169 phosphoglucomutase, putative / glucose
phosphomutase, putative similar to phosphoglucomutase
GI:534981 from [Spinacia oleracea], phosphomannomutase
[Pseudomonas aeruginosa] GI:150994; contains InterPro
accession IPR006352: Phosphoglucosamine mutase
Length = 615
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 311 RVESWFVGTCCEFWWLCGCVVDMDD 237
+++ W +GTC + W GC+VD +D
Sbjct: 508 KLKGWELGTCGDCWVTEGCLVDSND 532
>At1g52560.1 68414.m05933 26.5 kDa class I small heat shock
protein-like (HSP26.5-P) contains Pfam profile: PF00011
Hsp20/alpha crystallin family; identified in Scharf,
K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
Length = 232
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 406 SDRKSPRQKPHCFPSIKNRSSLWLNQD 486
S++KSPRQ FP + R SLW N D
Sbjct: 60 SEKKSPRQN---FPRRRGRKSLWRNTD 83
>At3g47620.1 68416.m05184 TCP family transcription factor, putative
auxin-induced basic helix-loop-helix transcription
factor - Gossypium hirsutum, EMBL:AF165924
Length = 489
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 420 PKTEASLLSIHQEQVQPLVEPRPQHQNLLPHTKSK 524
P + +SL S+HQ Q +P+ Q Q P T K
Sbjct: 59 PSSSSSLFSLHQHQQLSQSQPQSQSQKSQPQTTQK 93
>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 652
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 271 QNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKSP 423
Q QH +QD HH+ +++ S N S H +KR + S+D SP
Sbjct: 37 QQQQHKNNHQDDDDHHHNNNNRSGSK---NPNSLNHRSKRRNPNSNDGDSP 84
>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 496
Score = 24.2 bits (50), Expect(2) = 3.6
Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 6/125 (4%)
Frame = +3
Query: 132 SQTASSAFRLLPPGGHADHSSPHRPDGLRSGRCNSIIHIHNTTTK-----PPELTTRPHK 296
S T S + P H H H + H HN + K P + PH+
Sbjct: 316 SSTKSPSPSPSPHSKHHHHHHHHHHHHHHHHHNHHHHHHHNLSPKMAPEVSPVASPAPHR 375
Query: 297 PGFYAPSSPPSVTDRFN-HYWQRFILLPLEQATQYTVIRPQEPKTEASLLSIHQEQVQPL 473
APS+PP H+ ++ + A + P + +S + + P+
Sbjct: 376 SRKRAPSAPPPCNPGNRVHFKEKRVQFSSTPAPAPSAGAPHHQLHSPAPISAAKSHIVPI 435
Query: 474 VEPRP 488
P P
Sbjct: 436 SAPLP 440
Score = 23.0 bits (47), Expect(2) = 3.6
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +3
Query: 468 PLVEPRPQHQNLLPHTKSKSRAGS 539
P+ EPR H N + H + +S + +
Sbjct: 451 PITEPREPHANEVAHPQPQSSSSA 474
>At3g01750.1 68416.m00112 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 664
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 382 NKRLSTLSSDRKSPRQKPHCFPSIKNRSS 468
NKR + S++ SPR K F S+++RSS
Sbjct: 555 NKRTLAVRSNQSSPRAKKKRFGSVRSRSS 583
>At2g35910.1 68415.m04408 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 zinc finger
protein ATL6 [Arabidopsis thaliana] GI:4928403; contains
Pfam profile PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 217
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +1
Query: 292 TNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKSPRQKPHC 441
TNQDSTR HHH + G D ++ L S+ K P C
Sbjct: 100 TNQDSTRIHHHHHHVIIDVVPGLDEDTIQSYPKI--LYSEAKGPTTASCC 147
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 884
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/67 (31%), Positives = 25/67 (37%)
Frame = +3
Query: 312 PSSPPSVTDRFNHYWQRFILLPLEQATQYTVIRPQEPKTEASLLSIHQEQVQPLVEPRPQ 491
PS PP TD ++ Y+Q P+ TQ P P S H P P PQ
Sbjct: 14 PSGPPPPTDPYHQYYQHQARPPVPPPTQ-----PGGPPAWYSNQFHHPHSPSPPPPPPPQ 68
Query: 492 HQNLLPH 512
PH
Sbjct: 69 WGPPSPH 75
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/67 (31%), Positives = 25/67 (37%)
Frame = +3
Query: 312 PSSPPSVTDRFNHYWQRFILLPLEQATQYTVIRPQEPKTEASLLSIHQEQVQPLVEPRPQ 491
PS PP TD ++ Y+Q P+ TQ P P S H P P PQ
Sbjct: 14 PSGPPPPTDPYHQYYQHQARPPVPPPTQ-----PGGPPAWYSNQFHHPHSPSPPPPPPPQ 68
Query: 492 HQNLLPH 512
PH
Sbjct: 69 WGPPSPH 75
>At1g03630.1 68414.m00343 protochlorophyllide reductase C,
chloroplast / PCR C / NADPH-protochlorophyllide
oxidoreductase C (PORC) identical to SP:O48741
protochlorophyllide reductase C, chloroplast precursor
(EC 1.3.1.33) (PCR C) (NADPH-protochlorophyllide
oxidoreductase C) (POR C) [Arabidopsis thaliana]
Length = 401
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +1
Query: 286 VPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKSPRQKPHCFPSIK 456
+P+ + AS ++T TG+ S + +++STL + ++ RQKP I+
Sbjct: 10 LPSTISIQKEGKFNASLKETTFTGSSFSNHLRAEKISTLLTIKEQRRQKPRFSTGIR 66
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 249 HNTTTKPPELTTRPHKPGFYAPSSPP 326
+++TT PP L T+P P P +PP
Sbjct: 16 NSSTTAPPPLQTQPTTPSAPPPVTPP 41
>At5g03490.1 68418.m00305 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 465
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 402 VIRPQEPKTEASLLSIHQEQVQPLVEPRPQHQNLLPHTKSKSRAGSDG 545
++ P + LLS H V +V P P H +L P ++ G+ G
Sbjct: 51 IVTPGNLTYLSPLLSAHPSSVTSVVFPFPPHPSLSPGVENVKDVGNSG 98
>At3g22380.1 68416.m02825 expressed protein
Length = 1550
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 233 LHHPYPQHNHKATRTHNTSPQTRILRAVITTKRHRPIQPLLAT 361
LHH + HN+ R +N P T++ R ++ P+ PL++T
Sbjct: 157 LHHHHHSHNNNHQRKNN-FPPTKVFR---SSPSPAPVSPLVST 195
>At3g16785.1 68416.m02143 phospholipase D zeta1 / PLDzeta1 (PLDP1)
identical to phospholipase D zeta1 [Arabidopsis
thaliana] GI:15723315, SP|Q9LRZ5 Phospholipase D p1 (EC
3.1.4.4) (AtPLDp1) (Phospholipase D1 PHOX and PX
containing domain) (Phospholipase D zeta 1) (PLDzeta1)
{Arabidopsis thaliana}; supported by cDNA gi:15723314;
non-consensus splice site (GC) at the beginning of first
intron.
Length = 1096
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 237 IIHIHNTTTKPPELTTRPHKPGFYAPSSPPSVTD 338
+ I++ +PPE PH+ G YAP P +TD
Sbjct: 334 VASINDAALRPPEGWCHPHRFGSYAP--PRGLTD 365
>At5g18560.1 68418.m02194 AP2 domain-containing transcription
factor, putative AP2/EREBP-like transcription factor
LEAFY PETIOLE, Arabidopsis thaliana, EMBL:AF216581
Length = 348
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 236 HHPYPQHNHKATRTHNTSPQTRILRAVITTK-RHRPI 343
HHP+ Q+ H+ + +T PQT + A T RH+ +
Sbjct: 152 HHPHYQNYHQPQQPKHTLPQTVLPAASFKTPVRHQSV 188
>At4g08370.1 68417.m01382 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 350
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +3
Query: 165 PPGGHADHSSPHRPDGLRSGRCNSIIHIHNTTTKPPELTTRPHKPGFYAPSSPP 326
PP +SSP P + + +I+N+ +PP + P P F S PP
Sbjct: 55 PPPSPYLYSSPPPPPYVYNSPPPPPPYIYNSPPRPPYVYKSPPPPPFVYSSPPP 108
>At1g60220.1 68414.m06782 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 604
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 144 SSAFRLLPPGGHADHSSPHRPDGLRSGRCN 233
S+ +RLLP G A+HS+ GL+ + N
Sbjct: 231 SNGWRLLPDVGKAEHSAKQFDSGLKESKGN 260
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,189,875
Number of Sequences: 28952
Number of extensions: 363115
Number of successful extensions: 1436
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -