Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30232
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    29   0.85 
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    27   3.4  
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   3.4  

>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 296 HYGYLSSVIPISVMPGMLTVIYHR*YQLIC-YF*KMKDVQYVMRCVLQPYK 445
           H GY  + +  ++    L   Y   Y+++C YF K  D++Y+M+ VL   K
Sbjct: 167 HSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYIMKSVLNNSK 217


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 14  STYVFKYESNLYLLKSNSDMKFLHHGINESQNNPERCSNVGRVRSHQLC 160
           S Y  K++ N+ +L  + D+      I +S +NP      G  RSHQ+C
Sbjct: 35  SRYPSKFDLNVSMLTKSDDVGKTPFSIFDSPSNP------GFSRSHQMC 77


>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 570 SKITKPFMGTIATIAVLQFVTSNVITYFEMKNN 668
           +K+ KP + +  +      +TS V  YFE KNN
Sbjct: 65  TKVEKPHIRSSKSKVSYNSITSRVTKYFEEKNN 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,699,400
Number of Sequences: 5004
Number of extensions: 50937
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)