Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30232
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ...    33   0.26 
Z92824-2|CAB07305.1|  240|Caenorhabditis elegans B0413.6 protein.      28   5.6  
AL132948-10|CAC51066.1|  366|Caenorhabditis elegans Hypothetical...    28   5.6  
AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U41624-6|AAF99940.1|  127|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
           protein R193.2 protein.
          Length = 1853

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 174 NNWNNKLDIWALRYGPVILGACSAIGG**LTDS 272
           NNWNN L+  A +  P +LGA  A+ G  LT S
Sbjct: 886 NNWNNILNFTAYQLIPDLLGATGAVSGRALTSS 918


>Z92824-2|CAB07305.1|  240|Caenorhabditis elegans B0413.6 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 132 LDELEATNYAWDIVNNWNNK 191
           L  L  ++Y WDI NN NN+
Sbjct: 62  LSRLSTSDYQWDITNNRNNR 81


>AL132948-10|CAC51066.1|  366|Caenorhabditis elegans Hypothetical
           protein Y39B6A.11 protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 132 LDELEATNYAWDIVNNWNNK 191
           L  L  ++Y WDI NN NN+
Sbjct: 75  LSRLSTSDYQWDITNNRNNR 94


>AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical
           protein F37C4.2 protein.
          Length = 686

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 120 DAVTLDELEATNYAWDIVNNWN 185
           D +TLD++E  NY W + +N N
Sbjct: 414 DDMTLDDVERLNYRWSVNDNKN 435


>Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.7 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 610 IVAIVPIKGFVILLRNLKITLGPSNKSGTLYVE 512
           +V +VPI    +  +  K+  GP+  S TLY++
Sbjct: 194 LVVVVPISCLTLRRKIFKLLSGPNKSSDTLYLQ 226


>U41624-6|AAF99940.1|  127|Caenorhabditis elegans Hypothetical
           protein F46C8.1 protein.
          Length = 127

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 614 CYCCNCSHKRFCYF 573
           C+CC C+  R+C+F
Sbjct: 10  CFCCGCACCRWCFF 23


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,647,753
Number of Sequences: 27780
Number of extensions: 279267
Number of successful extensions: 571
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)