Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30231
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   128   7e-31
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   128   7e-31
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    30   0.20 
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   4.2  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   5.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   5.6  
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr...    25   5.6  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    25   9.7  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   9.7  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   9.7  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   9.7  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  128 bits (308), Expect = 7e-31
 Identities = 57/80 (71%), Positives = 68/80 (85%)
 Frame = +1

Query: 25  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 204
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 205 QPNSAIRKCVRVQLIKKERK 264
           QPNSAIRKCVRVQLIK  +K
Sbjct: 61  QPNSAIRKCVRVQLIKNGKK 80



 Score =  112 bits (269), Expect = 4e-26
 Identities = 51/66 (77%), Positives = 58/66 (87%)
 Frame = +3

Query: 255 GKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEK 434
           GKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EK
Sbjct: 78  GKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEK 137

Query: 435 KERPRS 452
           KE+PR+
Sbjct: 138 KEKPRA 143


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  128 bits (308), Expect = 7e-31
 Identities = 57/80 (71%), Positives = 68/80 (85%)
 Frame = +1

Query: 25  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 204
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 205 QPNSAIRKCVRVQLIKKERK 264
           QPNSAIRKCVRVQLIK  +K
Sbjct: 61  QPNSAIRKCVRVQLIKNGKK 80



 Score =  112 bits (269), Expect = 4e-26
 Identities = 51/66 (77%), Positives = 58/66 (87%)
 Frame = +3

Query: 255 GKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEK 434
           GKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EK
Sbjct: 78  GKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEK 137

Query: 435 KERPRS 452
           KE+PR+
Sbjct: 138 KEKPRA 143


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 151 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 246
           G+   +G+      V+ K+PNSA+RK  RV+L
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL 78


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 391 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSR 281
           +++K  P + P   P  P+ AT+TSS  +++   PSR
Sbjct: 392 SSVKALPTLEP---PSSPSHATATSSLHTLFHTAPSR 425


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 88  WADKEFKKAHMGTKWKANPFGGASHAKGIV 177
           W D EF   H   K+   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -1

Query: 94  PPIAVHDGGSRAYAP 50
           PP AV  GGSR YAP
Sbjct: 781 PPPAVSAGGSRYYAP 795


>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 449 SWSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 327
           SW L+++ V S+E+  GY   L     N+ D  G+    ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 548 CTQYLLCTRILHFRTYKQRASRQQVTYHNVH 456
           C QY      +H    K+    QQ+TY  VH
Sbjct: 277 CLQYTNTDLEMHIWEEKETIYEQQMTYQKVH 307


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 147 ERVSLPFRTHVGFLEFFVRPSLFTTVVHVLTRRSYS 40
           E + LP R  +  L FF +PSL + + +++  ++ S
Sbjct: 200 EPLPLPARPQISDLSFFRKPSLPSALQNIVIEKNAS 235


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 324 VLRRFLRCGLGNRHGGRMRSLSFLLNELYTDAFA 223
           +++RFL     NR+   + S+  L+N LYTD F+
Sbjct: 802 IVQRFLVQQDSNRYLHPLLSVMDLINLLYTDIFS 835


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 279 PRDGCLNHIEENDEVLVAGFGRKGHAVG 362
           PR+  +++ + ND + + G+G +GH  G
Sbjct: 74  PREKLVDYFK-NDTLAIIGYGSQGHGQG 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,598
Number of Sequences: 5004
Number of extensions: 50867
Number of successful extensions: 114
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)