Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30231
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 126 9e-30
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 126 2e-29
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 110 6e-25
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 5e-07
03_04_0240 + 19232391-19233098 29 3.2
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 29 3.2
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880 28 4.3
04_01_0440 + 5746474-5746662,5746895-5747251 28 4.3
03_02_0413 - 8224494-8224553,8224838-8225004,8225666-8225771,822... 28 4.3
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243... 28 4.3
01_01_0325 + 2631637-2631882,2632715-2632788,2632874-2633006,263... 28 5.6
01_01_0357 - 2816650-2817897 27 7.5
02_05_0362 + 28291891-28292263,28292432-28292616 27 9.9
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 126 bits (305), Expect = 9e-30
Identities = 55/85 (64%), Positives = 67/85 (78%)
Frame = +1
Query: 10 CRAIQMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKV 189
C ++ MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+
Sbjct: 166 CPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 224
Query: 190 GVEAKQPNSAIRKCVRVQLIKKERK 264
G+EAKQPNSAIRKC RVQL+K +K
Sbjct: 225 GIEAKQPNSAIRKCARVQLVKNGKK 249
Score = 126 bits (303), Expect = 2e-29
Identities = 57/66 (86%), Positives = 62/66 (93%)
Frame = +3
Query: 255 GKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEK 434
GKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEK
Sbjct: 247 GKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEK 306
Query: 435 KERPRS 452
KE+PRS
Sbjct: 307 KEKPRS 312
Score = 122 bits (294), Expect = 2e-28
Identities = 54/80 (67%), Positives = 64/80 (80%)
Frame = +1
Query: 25 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 204
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 205 QPNSAIRKCVRVQLIKKERK 264
QPNSAIRKC RVQL+K +K
Sbjct: 60 QPNSAIRKCARVQLVKNGKK 79
Score = 122 bits (294), Expect = 2e-28
Identities = 55/64 (85%), Positives = 60/64 (93%)
Frame = +3
Query: 255 GKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEK 434
GKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEK
Sbjct: 77 GKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEK 136
Query: 435 KERP 446
KE+P
Sbjct: 137 KEKP 140
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 126 bits (303), Expect = 2e-29
Identities = 57/66 (86%), Positives = 62/66 (93%)
Frame = +3
Query: 255 GKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEK 434
GKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEK
Sbjct: 77 GKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEK 136
Query: 435 KERPRS 452
KE+PRS
Sbjct: 137 KEKPRS 142
Score = 122 bits (294), Expect = 2e-28
Identities = 54/80 (67%), Positives = 64/80 (80%)
Frame = +1
Query: 25 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 204
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 205 QPNSAIRKCVRVQLIKKERK 264
QPNSAIRKC RVQL+K +K
Sbjct: 60 QPNSAIRKCARVQLVKNGKK 79
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 110 bits (265), Expect = 6e-25
Identities = 50/78 (64%), Positives = 59/78 (75%)
Frame = +1
Query: 31 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 210
K G+ RK HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 74 KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132
Query: 211 NSAIRKCVRVQLIKKERK 264
NSAI KC RVQL+K +K
Sbjct: 133 NSAICKCARVQLVKNGKK 150
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = +3
Query: 255 GKKVTAFVPRDGCLNHIEENDEVLVAG 335
GKK+ AFVP DGCLN I+EN+ V G
Sbjct: 148 GKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 5e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3
Query: 315 DEVLVAGFGRKGHAVGDIPGVRFKVVK 395
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>03_04_0240 + 19232391-19233098
Length = 235
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -2
Query: 291 NRHGGRMRSLSFLLNELYTDAFADGRV 211
N H GR SF L ELY A A GR+
Sbjct: 141 NTHAGRAEEDSFRLRELYASAGAFGRL 167
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -1
Query: 364 SPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFP 254
+PT P PNP ST SM F+ PS A FP
Sbjct: 3 TPTGNP-NPNPNPSTPFEVSMLFKPPSNAPAAAPIFP 38
>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
Length = 898
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 346 LRPNPATSTSSFSSMWFRQPSRGT 275
L P+ +T T +FS WFR PS+ T
Sbjct: 196 LPPDGSTVTIAFSERWFRIPSKWT 219
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 84 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 182
A+GG P GY+ +G PF C KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
>03_02_0413 -
8224494-8224553,8224838-8225004,8225666-8225771,
8226068-8226105,8226177-8226264,8226688-8226741,
8226810-8226918,8227280-8227362,8227444-8227506,
8227585-8227647,8227906-8227977,8228056-8228094,
8228182-8228237,8228316-8228375,8228444-8228558,
8228590-8228810,8228978-8229259,8229390-8229504
Length = 596
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/39 (25%), Positives = 24/39 (61%)
Frame = -1
Query: 544 HNIYYVLGFYILELINNALPDSRSLITMYTYDLGRSFFS 428
H++Y+V ++ L + N++ D+ SL+ ++ D + + S
Sbjct: 177 HHVYFVHSYHALPVRNSSFLDALSLVDLWNSDENKEWIS 215
>03_01_0309 -
2432395-2433271,2433494-2434495,2434538-2435073,
2435579-2435716,2436050-2436148,2436278-2436346,
2436968-2437063
Length = 938
Score = 28.3 bits (60), Expect = 4.3
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Frame = -2
Query: 483 TAGHLSQCTPMILVAPFSLCRERGET----RWLLLPP*NELRECHRRRDLYDRIPPLVLR 316
T GH+++ P+ L LCR E + ++ P E E H+ DL I +
Sbjct: 138 TTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNIAQITAC 197
Query: 315 RFLR-CGLGNRHGGRMRSLSFLLN 247
C +G S LLN
Sbjct: 198 TIQSLCKIGTHAASSGGSQVILLN 221
>01_01_0325 +
2631637-2631882,2632715-2632788,2632874-2633006,
2633091-2633172,2633471-2633580,2633659-2633751,
2633854-2633904,2634013-2634105,2635257-2636129,
2636204-2636316,2636436-2636448
Length = 626
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = -2
Query: 264 LSFLLNELYTDAFADGRVG--LLSFYTNFLEDD 172
+SFL+N + D + +V LLSF +NF+ED+
Sbjct: 172 ISFLINPAFLDESMEVKVTNPLLSFSSNFVEDE 204
>01_01_0357 - 2816650-2817897
Length = 415
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 363 HRRRDLYDRIPPLVLRRFLRCGLGNRHGG 277
H+ ++ DR+PPLVLR + G R G
Sbjct: 175 HQAQEHQDRVPPLVLRHAQQLGRARRVPG 203
>02_05_0362 + 28291891-28292263,28292432-28292616
Length = 185
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -2
Query: 381 NELRECHRRRDLYDRIPPLVLRRFLRCGLGNRHG-GRMRSLSFLL 250
N+L CHR+ +YD I L +F R LG+RH R + +F+L
Sbjct: 87 NQLDRCHRKWRIYD-INTL-NSQFRRSCLGHRHALARQQEDAFIL 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,721,825
Number of Sequences: 37544
Number of extensions: 380222
Number of successful extensions: 1030
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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