Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30231
(550 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 138 9e-33
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 138 9e-33
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 138 9e-33
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 119 8e-27
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 35 0.16
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 35 0.16
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 35 0.16
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 35 0.16
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 35 0.16
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 35 0.16
L19606-1|AAA03539.1| 450|Homo sapiens paired box homeotic prote... 30 6.1
BC001060-1|AAH01060.1| 450|Homo sapiens paired box gene 8 protein. 30 6.1
AC016683-2|AAX88880.1| 450|Homo sapiens unknown protein. 30 6.1
AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein. 30 6.1
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 138 bits (335), Expect = 9e-33
Identities = 64/80 (80%), Positives = 72/80 (90%)
Frame = +1
Query: 25 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 204
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 205 QPNSAIRKCVRVQLIKKERK 264
QPNSAIRKCVRVQLIK +K
Sbjct: 61 QPNSAIRKCVRVQLIKNGKK 80
Score = 132 bits (318), Expect = 1e-30
Identities = 62/66 (93%), Positives = 63/66 (95%)
Frame = +3
Query: 255 GKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEK 434
GKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK K
Sbjct: 78 GKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGK 137
Query: 435 KERPRS 452
KERPRS
Sbjct: 138 KERPRS 143
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 138 bits (335), Expect = 9e-33
Identities = 64/80 (80%), Positives = 72/80 (90%)
Frame = +1
Query: 25 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 204
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 205 QPNSAIRKCVRVQLIKKERK 264
QPNSAIRKCVRVQLIK +K
Sbjct: 61 QPNSAIRKCVRVQLIKNGKK 80
Score = 132 bits (318), Expect = 1e-30
Identities = 62/66 (93%), Positives = 63/66 (95%)
Frame = +3
Query: 255 GKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEK 434
GKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK K
Sbjct: 78 GKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGK 137
Query: 435 KERPRS 452
KERPRS
Sbjct: 138 KERPRS 143
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 138 bits (335), Expect = 9e-33
Identities = 64/80 (80%), Positives = 72/80 (90%)
Frame = +1
Query: 25 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 204
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 205 QPNSAIRKCVRVQLIKKERK 264
QPNSAIRKCVRVQLIK +K
Sbjct: 61 QPNSAIRKCVRVQLIKNGKK 80
Score = 132 bits (318), Expect = 1e-30
Identities = 62/66 (93%), Positives = 63/66 (95%)
Frame = +3
Query: 255 GKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEK 434
GKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK K
Sbjct: 78 GKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGK 137
Query: 435 KERPRS 452
KERPRS
Sbjct: 138 KERPRS 143
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 119 bits (286), Expect = 8e-27
Identities = 56/59 (94%), Positives = 56/59 (94%)
Frame = +3
Query: 273 FVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPR 449
FVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.16
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 133 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 246
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.16
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 133 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 246
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.16
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 133 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 246
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.16
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 133 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 246
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.16
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 133 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 246
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.16
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 133 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 246
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>L19606-1|AAA03539.1| 450|Homo sapiens paired box homeotic protein
protein.
Length = 450
Score = 29.9 bits (64), Expect = 6.1
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = -1
Query: 523 GFYILELINNALPDSRSLITMYTYDLGR--SFFSL*RARRDTLATFTTLKRTPGMSPTA* 350
G Y L L+N+ L D ++ +T LGR S D + F + TP +S ++
Sbjct: 260 GLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVADPHSPFAIKQETPEVSSSS- 318
Query: 349 PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFPS**AVHGRICG 221
+ +S SS + + +Q G FP +V+G+ G
Sbjct: 319 ----STPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTG 357
>BC001060-1|AAH01060.1| 450|Homo sapiens paired box gene 8 protein.
Length = 450
Score = 29.9 bits (64), Expect = 6.1
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = -1
Query: 523 GFYILELINNALPDSRSLITMYTYDLGR--SFFSL*RARRDTLATFTTLKRTPGMSPTA* 350
G Y L L+N+ L D ++ +T LGR S D + F + TP +S ++
Sbjct: 260 GLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVADPHSPFAIKQETPEVSSSS- 318
Query: 349 PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFPS**AVHGRICG 221
+ +S SS + + +Q G FP +V+G+ G
Sbjct: 319 ----STPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTG 357
>AC016683-2|AAX88880.1| 450|Homo sapiens unknown protein.
Length = 450
Score = 29.9 bits (64), Expect = 6.1
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = -1
Query: 523 GFYILELINNALPDSRSLITMYTYDLGR--SFFSL*RARRDTLATFTTLKRTPGMSPTA* 350
G Y L L+N+ L D ++ +T LGR S D + F + TP +S ++
Sbjct: 260 GLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVADPHSPFAIKQETPEVSSSS- 318
Query: 349 PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFPS**AVHGRICG 221
+ +S SS + + +Q G FP +V+G+ G
Sbjct: 319 ----STPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTG 357
>AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.
Length = 1332
Score = 29.9 bits (64), Expect = 6.1
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +3
Query: 111 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AAQLCHPQMRPC 239
SPHG +M G P RP ES+C PQ RPC
Sbjct: 37 SPHGPDMSG-PLEGADGGGDPRPGESFCPGGVPSPGPPQHRPC 78
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,913,418
Number of Sequences: 237096
Number of extensions: 1992633
Number of successful extensions: 6501
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6501
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -