Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30231
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   142   1e-34
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    36   0.025
U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    28   5.1  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  142 bits (345), Expect = 1e-34
 Identities = 63/80 (78%), Positives = 72/80 (90%)
 Frame = +1

Query: 25  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 204
           MGKP+G+ TARK   HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAK
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAK 60

Query: 205 QPNSAIRKCVRVQLIKKERK 264
           QPNSAIRKCVRVQLIK  +K
Sbjct: 61  QPNSAIRKCVRVQLIKNGKK 80



 Score =  124 bits (298), Expect = 6e-29
 Identities = 55/66 (83%), Positives = 61/66 (92%)
 Frame = +3

Query: 255 GKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEK 434
           GKK+TAFVP DGCLN +EENDEVLV+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K K
Sbjct: 78  GKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGK 137

Query: 435 KERPRS 452
           KERPRS
Sbjct: 138 KERPRS 143


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 35.5 bits (78), Expect = 0.025
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +1

Query: 151 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 246
           G SH KGIVL+ V    K+PNS  RKC  V+L
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL 103


>U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical
           protein D2024.4 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 96  VRPSLFTTVVHVLTRRSYSSG 34
           VRP + TTV+HV+ R    SG
Sbjct: 189 VRPGIMTTVIHVMDRNPMKSG 209


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 388 TLKRTPGMSPTA*PLRPNPATSTSS 314
           T  RTP  +P A P RP P+ S+++
Sbjct: 38  TTMRTPAATPAAPPTRPTPSRSSAA 62


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 388 TLKRTPGMSPTA*PLRPNPATSTSS 314
           T  RTP  +P A P RP P+ S+++
Sbjct: 167 TTMRTPAATPAAPPTRPTPSRSSAA 191


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 267 TAFVPRDGCLNHIEEN 314
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,696,909
Number of Sequences: 27780
Number of extensions: 300498
Number of successful extensions: 727
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)