Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30231
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...   127   6e-30
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...   127   6e-30
At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to ...    29   2.7  
At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase, p...    28   4.7  
At1g32960.1 68414.m04059 subtilase family protein contains simil...    28   4.7  
At1g32940.1 68414.m04057 subtilase family protein contains simil...    28   4.7  
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P...    27   8.3  
At1g71680.1 68414.m08271 lysine and histidine specific transport...    27   8.3  

>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score =  127 bits (306), Expect = 6e-30
 Identities = 57/66 (86%), Positives = 63/66 (95%)
 Frame = +3

Query: 255 GKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEK 434
           GKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEK
Sbjct: 77  GKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEK 136

Query: 435 KERPRS 452
           KE+PRS
Sbjct: 137 KEKPRS 142



 Score =  116 bits (279), Expect = 1e-26
 Identities = 53/80 (66%), Positives = 63/80 (78%)
 Frame = +1

Query: 25  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 204
           MGK RG+   RK    R  QRWADK++KK+H+G +WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 205 QPNSAIRKCVRVQLIKKERK 264
           QPNSAIRKC RVQLIK  +K
Sbjct: 60  QPNSAIRKCARVQLIKNGKK 79


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score =  127 bits (306), Expect = 6e-30
 Identities = 57/66 (86%), Positives = 63/66 (95%)
 Frame = +3

Query: 255 GKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEK 434
           GKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEK
Sbjct: 77  GKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEK 136

Query: 435 KERPRS 452
           KE+PRS
Sbjct: 137 KEKPRS 142



 Score =  107 bits (257), Expect = 5e-24
 Identities = 51/80 (63%), Positives = 60/80 (75%)
 Frame = +1

Query: 25  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 204
           MGK RG+   RK    R  QRWADK +KK++ G +WK  PF  +SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAK 59

Query: 205 QPNSAIRKCVRVQLIKKERK 264
           QPNSAIRKC RVQLIK  +K
Sbjct: 60  QPNSAIRKCARVQLIKNGKK 79


>At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 289

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 387 VVKVANVSLLALYKEKKERPRS*VYIVISDLLSGSALFI 503
           VV++  +SL   Y  KKE+  +  +++  D+L   A+F+
Sbjct: 80  VVQIVYISLFFFYAPKKEKTLTVKFVLFVDVLGFGAIFV 118


>At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase,
           putative similar to dihydrolipoamide acetyltransferase
           (E2) subunit of PDC [Arabidopsis thaliana] GI:559395;
           contains Pfam profiles PF00198: 2-oxo acid
           dehydrogenases acyltransferase (catalytic domain),
           PF00364: Biotin-requiring enzyme, PF02817: e3 binding
           domain; supporting cDNA
           gi|5881964|gb|AF066080.1|AF066080
          Length = 637

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 133 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKKERK*PH 273
           K  P   +S +K  V +        PNS IRK +  +L++ ++K PH
Sbjct: 386 KETPSKSSSTSKPSVTQSDNNYEDFPNSQIRKIIAKRLLESKQKIPH 432


>At1g32960.1 68414.m04059 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
          Length = 777

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 88  WADKEFKKAHMGTKWKANPFGGASHAKG 171
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602


>At1g32940.1 68414.m04057 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 774

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 88  WADKEFKKAHMGTKWKANPFGGASHAKG 171
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599


>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
           At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
           At1g25886, At4g03300
          Length = 1312

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 252 EGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 410
           E KK +  VP+      + E D+V   GF  K   V D+P  + +VV +  NVS
Sbjct: 820 EEKKSSPKVPKKVKNQLVYEQDDVHPHGFKAKTVLVPDVPNQQIEVVIRAENVS 873


>At1g71680.1 68414.m08271 lysine and histidine specific transporter,
           putative similar to lysine and histidine specific
           transporter GB: AAC49885 GI:2576361 from (Arabidopsis
           thaliana); contains Pfam profile PF01490: Transmembrane
           amino acid transporter protein
          Length = 434

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 547 VHNIYYVLGFYILELINNALPDSRSL 470
           +   YY+LGF  L+L+ +  PD  S+
Sbjct: 159 IRQTYYILGFAALQLVLSQSPDFNSI 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,018,211
Number of Sequences: 28952
Number of extensions: 282163
Number of successful extensions: 683
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)