Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30230
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 138 9e-34
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 138 9e-34
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 94 2e-20
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 79 8e-16
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 50 2e-07
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 44 3e-05
SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subu... 29 0.65
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 29 0.65
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 29 0.86
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 27 3.5
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 27 3.5
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 4.6
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 4.6
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 8.0
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 25 8.0
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 138 bits (333), Expect = 9e-34
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = +3
Query: 3 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLE 182
PVV+VAVE KN DLPKLVEGLKRL+KSDP V C ESGEHIVAGAGELHLEICLKDL+
Sbjct: 487 PVVQVAVEVKNGNDLPKLVEGLKRLSKSDPCVLCTTSESGEHIVAGAGELHLEICLKDLQ 546
Query: 183 EDHACIPIKKSDPVVSYRETVAEERTSSVSQSRP 284
EDHA IP+K S PVVSYRE+V+E + + P
Sbjct: 547 EDHAGIPLKISPPVVSYRESVSEPSSMTALSKSP 580
Score = 130 bits (315), Expect = 1e-31
Identities = 67/144 (46%), Positives = 92/144 (63%), Gaps = 5/144 (3%)
Frame = +2
Query: 269 LSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWC 448
LSKSPNKHNR+FM A+PM + L I+ G VNPRDDFK RAR + +++ +DVT+ARKIWC
Sbjct: 576 LSKSPNKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWC 635
Query: 449 FGPEGTGPNILVDCSKGVQYSMKLR-----TLLWLDSSGPLRKELWLKRFAWC*ISTSMM 613
FGP+ TG N++VD +K V Y +++ W GP+ +E L+ + + +
Sbjct: 636 FGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEEN-LRSCRFNILDVVL- 693
Query: 614 *HFHTDAIHRGGGPNHFPTTRRLL 685
H DAIHRGGG PT RR++
Sbjct: 694 ---HADAIHRGGG-QIIPTARRVV 713
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 138 bits (333), Expect = 9e-34
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = +3
Query: 3 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLE 182
PVV+VAVE KN DLPKLVEGLKRL+KSDP V C ESGEHIVAGAGELHLEICLKDL+
Sbjct: 487 PVVQVAVEVKNGNDLPKLVEGLKRLSKSDPCVLCTTSESGEHIVAGAGELHLEICLKDLQ 546
Query: 183 EDHACIPIKKSDPVVSYRETVAEERTSSVSQSRP 284
EDHA IP+K S PVVSYRE+V+E + + P
Sbjct: 547 EDHAGIPLKISPPVVSYRESVSEPSSMTALSKSP 580
Score = 130 bits (315), Expect = 1e-31
Identities = 67/144 (46%), Positives = 92/144 (63%), Gaps = 5/144 (3%)
Frame = +2
Query: 269 LSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWC 448
LSKSPNKHNR+FM A+PM + L I+ G VNPRDDFK RAR + +++ +DVT+ARKIWC
Sbjct: 576 LSKSPNKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWC 635
Query: 449 FGPEGTGPNILVDCSKGVQYSMKLR-----TLLWLDSSGPLRKELWLKRFAWC*ISTSMM 613
FGP+ TG N++VD +K V Y +++ W GP+ +E L+ + + +
Sbjct: 636 FGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEEN-LRSCRFNILDVVL- 693
Query: 614 *HFHTDAIHRGGGPNHFPTTRRLL 685
H DAIHRGGG PT RR++
Sbjct: 694 ---HADAIHRGGG-QIIPTARRVV 713
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 93.9 bits (223), Expect = 2e-20
Identities = 45/80 (56%), Positives = 57/80 (71%)
Frame = +3
Query: 3 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLE 182
P+VRVA+EP P ++ KLV GL L ++DP VQ EE+GEH++ AGE+HLE CLKDL
Sbjct: 562 PIVRVALEPVRPFEMNKLVTGLDMLNQADPCVQIAVEENGEHVIMCAGEIHLERCLKDLR 621
Query: 183 EDHACIPIKKSDPVVSYRET 242
E A I I+ S P+V YRET
Sbjct: 622 ERFAKIEIQASQPLVPYRET 641
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +2
Query: 371 DDFKTRARYLTEKYEYDVTEARK----IWCFGPEGTGPNILVDCSK 496
+ F R L E+ D+ E + I FGP+ GPNIL D +K
Sbjct: 724 EKFYERLSKLLEEENSDLGELKNHLDSIIAFGPKRVGPNILFDKTK 769
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 78.6 bits (185), Expect = 8e-16
Identities = 40/88 (45%), Positives = 59/88 (67%)
Frame = +3
Query: 6 VVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEE 185
V +VAVEP NP++LPKL++GL++ KS P+ EESGEH + G GE++++ L DL
Sbjct: 600 VFKVAVEPHNPSELPKLLDGLRKTNKSYPLSITKVEESGEHTIFGTGEMYMDCLLYDLRT 659
Query: 186 DHACIPIKKSDPVVSYRETVAEERTSSV 269
++ I I+ SDPV + ET + TSS+
Sbjct: 660 LYSEIEIRVSDPVARFCETAVD--TSSI 685
Score = 70.5 bits (165), Expect = 2e-13
Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 9/148 (6%)
Frame = +2
Query: 266 CLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIW 445
C S +PNK NR+ M +P+ G+ DI+ G+VN K + + + Y++D+ +R IW
Sbjct: 687 CFSDTPNKKNRITMVVEPLEKGISNDIENGKVNINWPQKRISEFFQKNYDWDLLASRSIW 746
Query: 446 CFGPEGTGPNIL------VDCSKGVQYSMK---LRTLLWLDSSGPLRKELWLKRFAWC*I 598
FGP+ G NIL D K V S+K + W GPL E ++ + +
Sbjct: 747 AFGPDDRGTNILRDDTLSTDVDKNVLNSVKEYIKQGFQWGTREGPLCDET-IRNVNFRLM 805
Query: 599 STSMM*HFHTDAIHRGGGPNHFPTTRRL 682
+ + I+RGGG PT RR+
Sbjct: 806 DVVLA----PEQIYRGGG-QIIPTARRV 828
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 50.4 bits (115), Expect = 2e-07
Identities = 25/85 (29%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKDL 179
PV+ ++++PK+ D + L R + DP + ++ ES E I++G GELHLE+ ++ +
Sbjct: 474 PVISLSLKPKSK-DTTSFSKALNRFQREDPTFRVQLDNESKETIISGMGELHLEVYVERM 532
Query: 180 EEDHACIPIKKSDPVVSYRETVAEE 254
++ + + P V++RET++++
Sbjct: 533 RREYK-VDCETGKPRVAFRETLSKK 556
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 43.6 bits (98), Expect = 3e-05
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +3
Query: 3 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINE-ESGEHIVAGAGELHLEICLKDL 179
PV ++EP + D P L+E L + + DP + + E+G+ ++ G G +HL++ + L
Sbjct: 443 PVCIASIEPYSLKDEPALLEALANMNREDPSFRYTQDLENGQLLIQGMGIMHLQVSYERL 502
Query: 180 EEDHACIPIKKSDPVVSYRETVAEERTSSVSQS 278
+ V YRET+ + +SV+ S
Sbjct: 503 VSEFGA-RASLGKVQVGYRETLIDVSFNSVTLS 534
>SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subunit
Tfg3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 241
Score = 29.1 bits (62), Expect = 0.65
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +3
Query: 36 PADLPKLVEGLKRLAKSD--PMVQCINEESGEHIVA----GAGELHLEI 164
P D+ KL EGL++L + D +VQ +NE + GE H+++
Sbjct: 172 PVDMDKLAEGLQKLQEDDLLQVVQMVNENKTPDMYVRNDIEGGEFHIDL 220
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 29.1 bits (62), Expect = 0.65
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -3
Query: 253 SSATVSRYDTTGSDFLIGMQAWSSSRSLRQISRWSSPAPATMCSPDSSLIHCTMGS 86
S T YDTTG+D ++ SS R WS+ P +P ++ I+ T GS
Sbjct: 117 SDYTSVYYDTTGTDDVVYEYHPSSERHKSTNDTWSTNLPT---NPTTTAIYSTSGS 169
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 28.7 bits (61), Expect = 0.86
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -1
Query: 552 GPLESSHNRVLNFIEY*TPLEQSTRMLGPVPSGPKHQILRASVTSYSYFS 403
G L SSHN +EY +++ + V G KH +LRA+ +Y YFS
Sbjct: 288 GLLVSSHNHPC-VVEYSEISDEACKATENV-DGHKHLLLRAANIAYHYFS 335
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 344 IDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNIL 481
++E + R+ + Y + + VT ++ + FGP GTG +L
Sbjct: 502 LEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLL 547
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 460 LGAKAPNLTGFGNIVFVLFCKIPSAS 383
+G PNL GN +F L ++PS+S
Sbjct: 169 IGILPPNLNSIGNKMFSLKSRVPSSS 194
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 332 LPEDIDEGRVNPRDDFKT 385
LPE IDEG+++ DD KT
Sbjct: 194 LPEKIDEGKLSDVDDGKT 211
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 269 LSKSPNKHNRLFMKAQPMPDGL 334
++KS KHN+L K +P+P L
Sbjct: 243 INKSVKKHNKLVKKHKPLPSTL 264
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = -3
Query: 151 SSPAPATMCSPDSSL--IHCTMGSDLARRLRPS 59
S+ +P+T+CSPD+++ ++ G L ++ P+
Sbjct: 403 SNVSPSTICSPDNNVTFVNLAPGEKLTFKIEPN 435
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 25.4 bits (53), Expect = 8.0
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +3
Query: 30 KNPADLPKLVEGLKRLAKSDPMVQC-INEES--GEHIVAGAGELHLEICLKDLEEDHACI 200
K P +P L KR KS QC I +E + G G+L+ + + + D + +
Sbjct: 16 KEPGKVPPLDIDFKRSVKSSQFSQCAITDEPLYPPIVSCGLGKLYNKASILQMLLDRSSV 75
Query: 201 PIKKSDPVVSYRETV 245
P K + S ++ V
Sbjct: 76 P-KSPSHIKSLKDVV 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,106,461
Number of Sequences: 5004
Number of extensions: 66656
Number of successful extensions: 233
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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