Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30230
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0662 + 30987187-30987277,30987825-30990214 140 7e-34
04_01_0103 + 1082077-1082167,1083037-1085477 131 6e-31
02_04_0017 + 18937774-18937864,18938505-18940945 131 6e-31
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 112 2e-25
03_05_0511 + 25056018-25059107 98 7e-21
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 95 6e-20
02_04_0148 - 20198407-20201424 93 3e-19
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 63 2e-10
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 53 2e-07
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 32 0.51
06_02_0251 - 13478902-13478952,13478989-13479055,13479168-134793... 31 0.90
09_06_0271 + 21959213-21960559 28 8.4
07_01_0455 - 3458432-3458574,3458768-3460619 28 8.4
06_01_0724 + 5299278-5299542,5299690-5299950,5300246-5300351,530... 28 8.4
02_02_0340 + 9135846-9138377 28 8.4
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 140 bits (340), Expect = 7e-34
Identities = 71/144 (49%), Positives = 96/144 (66%), Gaps = 5/144 (3%)
Frame = +2
Query: 269 LSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWC 448
+SKSPNKHNRL+M+A+PM +GLPE IDEGR+ PRDD K R++ L+E++ +D A+KIWC
Sbjct: 573 MSKSPNKHNRLYMEARPMEEGLPEAIDEGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWC 632
Query: 449 FGPEGTGPNILVDCSKGVQYSMKLRTLL-----WLDSSGPLRKELWLKRFAWC*ISTSMM 613
FGPE TGPNI+VD KGVQY +++ + W G L +E R + ++
Sbjct: 633 FGPETTGPNIVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGRGICFEVCDVIL 692
Query: 614 *HFHTDAIHRGGGPNHFPTTRRLL 685
H+DAIHRGGG PT RR++
Sbjct: 693 ---HSDAIHRGGG-QIIPTARRVI 712
Score = 125 bits (301), Expect = 4e-29
Identities = 65/95 (68%), Positives = 72/95 (75%), Gaps = 1/95 (1%)
Frame = +3
Query: 3 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLE 182
PVVRVAV+ K +DLPKLVEGLKRLAKSDPMV C EESGEHI+AGAGELHLEICLKDL+
Sbjct: 483 PVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLCTVEESGEHIIAGAGELHLEICLKDLQ 542
Query: 183 EDH-ACIPIKKSDPVVSYRETVAEERTSSVSQSRP 284
ED I S PVVS+RETV E+ +V P
Sbjct: 543 EDFMGGAEITVSPPVVSFRETVLEKSCRTVMSKSP 577
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 131 bits (316), Expect = 6e-31
Identities = 67/144 (46%), Positives = 93/144 (64%), Gaps = 5/144 (3%)
Frame = +2
Query: 269 LSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWC 448
+SKSPNKHNRL+M+A+P+ +GL E ID+GR+ PRDD K R++ L+E++ +D A+KIWC
Sbjct: 577 MSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWC 636
Query: 449 FGPEGTGPNILVDCSKGVQYSMKLRTLL-----WLDSSGPLRKELWLKRFAWC*ISTSMM 613
FGPE TGPN++VD KGVQY +++ + W G L +E C ++
Sbjct: 637 FGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEE---NMRGICFEVCDVV 693
Query: 614 *HFHTDAIHRGGGPNHFPTTRRLL 685
H DAIHRGGG PT RR++
Sbjct: 694 --LHADAIHRGGG-QVIPTARRVI 714
Score = 124 bits (299), Expect = 7e-29
Identities = 65/95 (68%), Positives = 72/95 (75%), Gaps = 1/95 (1%)
Frame = +3
Query: 3 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLE 182
PVVRVAV+ K +DLPKLVEGLKRLAKSDPMV C EESGEHI+AGAGELHLEICLKDL+
Sbjct: 487 PVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLCTIEESGEHIIAGAGELHLEICLKDLQ 546
Query: 183 EDH-ACIPIKKSDPVVSYRETVAEERTSSVSQSRP 284
ED I S PVVS+RETV E+ +V P
Sbjct: 547 EDFMGGAEIIVSPPVVSFRETVLEKSCRTVMSKSP 581
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 131 bits (316), Expect = 6e-31
Identities = 67/144 (46%), Positives = 93/144 (64%), Gaps = 5/144 (3%)
Frame = +2
Query: 269 LSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWC 448
+SKSPNKHNRL+M+A+P+ +GL E ID+GR+ PRDD K R++ L+E++ +D A+KIWC
Sbjct: 577 MSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWC 636
Query: 449 FGPEGTGPNILVDCSKGVQYSMKLRTLL-----WLDSSGPLRKELWLKRFAWC*ISTSMM 613
FGPE TGPN++VD KGVQY +++ + W G L +E C ++
Sbjct: 637 FGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEE---NMRGICFEVCDVV 693
Query: 614 *HFHTDAIHRGGGPNHFPTTRRLL 685
H DAIHRGGG PT RR++
Sbjct: 694 --LHADAIHRGGG-QVIPTARRVI 714
Score = 124 bits (299), Expect = 7e-29
Identities = 65/95 (68%), Positives = 72/95 (75%), Gaps = 1/95 (1%)
Frame = +3
Query: 3 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLE 182
PVVRVAV+ K +DLPKLVEGLKRLAKSDPMV C EESGEHI+AGAGELHLEICLKDL+
Sbjct: 487 PVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLCTIEESGEHIIAGAGELHLEICLKDLQ 546
Query: 183 EDH-ACIPIKKSDPVVSYRETVAEERTSSVSQSRP 284
ED I S PVVS+RETV E+ +V P
Sbjct: 547 EDFMGGAEIIVSPPVVSFRETVLEKSCRTVMSKSP 581
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 112 bits (270), Expect = 2e-25
Identities = 54/95 (56%), Positives = 68/95 (71%), Gaps = 1/95 (1%)
Frame = +3
Query: 3 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLE 182
PVVR +V KN ++LPKLVEGLKRLAKSDP+V C EESGEH++AG G+LHLEIC+KDL+
Sbjct: 489 PVVRKSVACKNASELPKLVEGLKRLAKSDPLVVCTIEESGEHVIAGVGQLHLEICIKDLQ 548
Query: 183 EDH-ACIPIKKSDPVVSYRETVAEERTSSVSQSRP 284
ED I P+++YRETV + +V P
Sbjct: 549 EDFMGGAEIIVGPPIITYRETVTKNSCRTVMSKSP 583
Score = 109 bits (261), Expect = 3e-24
Identities = 63/153 (41%), Positives = 91/153 (59%), Gaps = 14/153 (9%)
Frame = +2
Query: 269 LSKSPNKHNRLFMKAQPMP-DGLPED-------IDEGRVNPRDDFKTRARYLTEKYEYDV 424
+SKSPNKHNRL+M+A+P+ + L +D ID+ R+ P+DD K R + L+E++ +D
Sbjct: 579 MSKSPNKHNRLYMEARPLDKEDLQQDEPSLCKAIDDERIGPKDDIKERGKILSEEFGWDK 638
Query: 425 TEARKIWCFGPEGTGPNILVDCSKGVQYSMKLRTLL-----WLDSSGPLRKE-LWLKRFA 586
A+KIW FGPE GPN+LVD KGVQY +++ + W G L +E + F
Sbjct: 639 DLAKKIWAFGPETKGPNLLVDMCKGVQYLSEIKDSVVAGFQWASKEGALAEENMRGVCFE 698
Query: 587 WC*ISTSMM*HFHTDAIHRGGGPNHFPTTRRLL 685
C ++ H+D+IHRGGG PT RR +
Sbjct: 699 LCDVT------LHSDSIHRGGG-QLIPTARRAM 724
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 97.9 bits (233), Expect = 7e-21
Identities = 44/84 (52%), Positives = 62/84 (73%)
Frame = +3
Query: 3 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLE 182
P+++VA+EP NPADL LV+GLK L ++DP V+ + GEH++A AGE+HLE C KDLE
Sbjct: 536 PMLKVAIEPSNPADLGALVKGLKLLNRADPFVEYTVSQRGEHVLAAAGEIHLERCKKDLE 595
Query: 183 EDHACIPIKKSDPVVSYRETVAEE 254
E A + + SDP+VS++ET+ E
Sbjct: 596 ERFAKVKLVVSDPLVSFKETIEGE 619
>06_03_0715 -
23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 94.7 bits (225), Expect = 6e-20
Identities = 44/89 (49%), Positives = 67/89 (75%)
Frame = +3
Query: 3 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLE 182
PVV++A EP NP++LPK+VEGL++++KS P+ EESGEH + G GEL+L+ +KDL
Sbjct: 610 PVVKIAAEPLNPSELPKMVEGLRKISKSYPLAVTKVEESGEHTILGTGELYLDSIMKDLR 669
Query: 183 EDHACIPIKKSDPVVSYRETVAEERTSSV 269
E ++ + +K +DPVV++ ETV + TSS+
Sbjct: 670 ELYSEVEVKVADPVVTFCETVVD--TSSM 696
Score = 81.0 bits (191), Expect = 8e-16
Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 9/149 (6%)
Frame = +2
Query: 266 CLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIW 445
C +++PNK N++ M A+P+ GL EDI+ G V+ K + ++Y++DV AR IW
Sbjct: 698 CFAETPNKRNKITMVAEPLEKGLAEDIENGLVSLDSRQKEITDFFRQRYQWDVLAARSIW 757
Query: 446 CFGPEGTGPNILVDCSKGVQYSMKLRTLL---------WLDSSGPLRKELWLKRFAWC*I 598
FGPE GPNIL+D + V+ L + W GPL E ++ + +
Sbjct: 758 AFGPEKQGPNILLDDTLSVEVDKNLLNAVKDSIVQGFQWGAREGPLCDEP-IRNVKFKIL 816
Query: 599 STSMM*HFHTDAIHRGGGPNHFPTTRRLL 685
+ ++ + +HRGGG PT RR++
Sbjct: 817 NANIA----PEPLHRGGG-QIIPTARRVV 840
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Frame = +1
Query: 448 LWPRGYRPQHPGGLLQRS-------SVLNEIKDSVVAGFQWAAKEGVMAEEICVVLDFNI 606
+W G Q P LL + ++LN +KDS+V GFQW A+EG + +E + F I
Sbjct: 756 IWAFGPEKQGPNILLDDTLSVEVDKNLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKI 815
Query: 607 YDVTL 621
+ +
Sbjct: 816 LNANI 820
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 92.7 bits (220), Expect = 3e-19
Identities = 39/84 (46%), Positives = 63/84 (75%)
Frame = +3
Query: 3 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLE 182
P+++VA+EP NP+DL LV+GLK L ++DP ++ E GEH++A AGE+HLE C+K+L+
Sbjct: 516 PMLKVAIEPSNPSDLGALVKGLKLLNQADPFIEYTVSERGEHVLAAAGEIHLEHCIKNLQ 575
Query: 183 EDHACIPIKKSDPVVSYRETVAEE 254
E A + ++ S P+VS+++T+ E
Sbjct: 576 ERFARVQLEVSKPLVSFKDTIQGE 599
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 63.3 bits (147), Expect = 2e-10
Identities = 31/84 (36%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Frame = +3
Query: 3 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQ-CINEESGEHIVAGAGELHLEICLKDL 179
PV++VA+EPK AD K+ GL +LA+ DP +EE+ + ++ G GELHL+I + L
Sbjct: 457 PVIKVAIEPKTKADADKMATGLIKLAQEDPSFHFSRDEETNQTVIEGMGELHLDIIVDRL 516
Query: 180 EEDHACIPIKKSDPVVSYRETVAE 251
+ + + P V+YRE++++
Sbjct: 517 KREFR-VEANVGAPQVNYRESISK 539
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +3
Query: 3 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKDL 179
PV+ +AV P + + + L R K DP + ++ ESGE I++G GELHL+I ++ +
Sbjct: 477 PVMSLAVSPISKDSGGQFSKALNRFQKEDPTFRVGLDPESGETIISGMGELHLDIYVERI 536
Query: 180 EEDHACIPIKKSDPVVSYRETVAE 251
++ + K P V++RET+ +
Sbjct: 537 RREYK-VDAKVGKPRVNFRETITQ 559
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 145 PAPATMCSPDSSLIHCTMGSDLARRLRPSTSLGRSAGFLGSTATRTT 5
P+P+ D S C GS + + P+T+ AG S T +T
Sbjct: 342 PSPSEAIGTDGSSTSCGTGSSVTNAIAPATTTSTFAGLFASVTTSST 388
>06_02_0251 -
13478902-13478952,13478989-13479055,13479168-13479379,
13480144-13481540,13481574-13482432,13482537-13482836
Length = 961
Score = 31.1 bits (67), Expect = 0.90
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +3
Query: 42 DLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICL-KDLEEDHACIPIKKSD 218
DLP+ E + + AK+ NEE E I+ +LH E+C KD + H + +
Sbjct: 684 DLPE--ESIHQSAKNSTENTSYNEEPEESIIKRKIKLHQEMCNDKDAQTKHKVEGVSEIG 741
Query: 219 PVVSYRETVAEERTSSVSQSRPT 287
P V + T + +S+ T
Sbjct: 742 PEFGPSNDVCKTETVAKKRSKKT 764
>09_06_0271 + 21959213-21960559
Length = 448
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +3
Query: 108 NEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEERTS 263
++E G + L E CL D + D+A I + V +RE + T+
Sbjct: 52 DDEEGRQLREKLESLEREFCLLDEQRDNALFQIHVLEETVRFREELVRRLTA 103
>07_01_0455 - 3458432-3458574,3458768-3460619
Length = 664
Score = 27.9 bits (59), Expect = 8.4
Identities = 22/79 (27%), Positives = 33/79 (41%)
Frame = -3
Query: 397 IPSASLEVIAGIHATLINVLWQTIRHGLSLHE*TVVLVGRL*ETELVRSSATVSRYDTTG 218
+P A +E+I G+H VLW TI H +V +G +L+ T S Y
Sbjct: 432 VPEA-IELIEGMHIAPDPVLWGTILSSCKTH--GLVDLGVSVGNKLIELDPTHSGYYVLL 488
Query: 217 SDFLIGMQAWSSSRSLRQI 161
S W R +R++
Sbjct: 489 SGIYAKANKWDEVREVRKL 507
>06_01_0724 +
5299278-5299542,5299690-5299950,5300246-5300351,
5300633-5300697,5300759-5301233,5302239-5302347,
5302432-5302710,5303025-5303231,5303319-5303468,
5304164-5304277
Length = 676
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 481 GGLLQRSSVLNEIKDSVVAGFQWAAKEGV-MAEEICVVLDFNIYDVTLPY 627
GG+ +S++ + D+ +A QW KE + + E+I + L I+ + L +
Sbjct: 75 GGIGAITSLVRHVYDAQIAAAQWNGKELIDVPEDITLELAIEIWQIFLEH 124
>02_02_0340 + 9135846-9138377
Length = 843
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 226 TTGSDFLIGMQAWSSSRSLRQISRWSSPAPATMCS 122
TTGSD L G+Q + R+L I+ P +CS
Sbjct: 801 TTGSDVLDGLQPHYNLRALGIINHGGPTGPGWLCS 835
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,622,937
Number of Sequences: 37544
Number of extensions: 493872
Number of successful extensions: 1428
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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