Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30230
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   160   1e-39
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              88   6e-18
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 54   9e-08
SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.074
SB_38648| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)                     29   2.8  
SB_14902| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)                    29   4.9  
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)                   29   4.9  
SB_7387| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_28265| Best HMM Match : Ank (HMM E-Value=6.3e-20)                   28   6.5  
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_21778| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   8.5  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  160 bits (388), Expect = 1e-39
 Identities = 75/94 (79%), Positives = 80/94 (85%)
 Frame = +3

Query: 3   PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLE 182
           PVVRVAVEPKNPADLPKLVEGL RLAKSDPMVQ   EESGEHIVAGAGELHLEICLKDLE
Sbjct: 477 PVVRVAVEPKNPADLPKLVEGLNRLAKSDPMVQSFTEESGEHIVAGAGELHLEICLKDLE 536

Query: 183 EDHACIPIKKSDPVVSYRETVAEERTSSVSQSRP 284
           EDHACIP+KKS+PVVSYRE V+++         P
Sbjct: 537 EDHACIPLKKSEPVVSYRECVSDKSNQMCLSKSP 570



 Score =  154 bits (374), Expect = 6e-38
 Identities = 83/151 (54%), Positives = 101/151 (66%), Gaps = 7/151 (4%)
 Frame = +2

Query: 254 TDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEG-RVNPRDDFKTRARYLTEKYEYDVTE 430
           ++Q+CLSKSPNKHNRLFM A P+ + LPEDID+G  +NPR DFK RARYL + Y +DV E
Sbjct: 561 SNQMCLSKSPNKHNRLFMTAGPLEEKLPEDIDDGCEINPRQDFKIRARYLADTYGWDVNE 620

Query: 431 ARKIWCFGPEGTGPNILVDCSKGVQYSMKLRTLL-----WLDSSGPLRKE-LWLKRFAWC 592
           ARKIW FGPEGTGPN+LVD SKGVQY  +++  +     W    GPL  E +   RF   
Sbjct: 621 ARKIWSFGPEGTGPNLLVDVSKGVQYLNEIKDSVVAGFQWATKEGPLCDENVRGVRFNIH 680

Query: 593 *ISTSMM*HFHTDAIHRGGGPNHFPTTRRLL 685
            ++       H DAIHRGGG    PT RR+L
Sbjct: 681 DVT------LHADAIHRGGG-QIIPTARRVL 704


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 40/87 (45%), Positives = 65/87 (74%)
 Frame = +3

Query: 9   VRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEED 188
           +++AVEP NP++LPK+++GL+++ KS P++    EESGEH++ G GEL+L+  + DL   
Sbjct: 456 IKIAVEPHNPSELPKMLDGLRKVNKSYPLLTTKVEESGEHVILGTGELYLDCIMHDLRRM 515

Query: 189 HACIPIKKSDPVVSYRETVAEERTSSV 269
           ++ I IK +DPV+++ ETV E  TSS+
Sbjct: 516 YSEIDIKVADPVIAFCETVVE--TSSL 540



 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 9/148 (6%)
 Frame = +2

Query: 266 CLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIW 445
           C +++PNK N++ M A+P+  GL EDI+  +V    + K    +   KY++D+  AR IW
Sbjct: 542 CFAETPNKKNKVTMIAEPLEKGLAEDIENEKVLISWNKKKLGEFFQTKYDWDLLAARSIW 601

Query: 446 CFGPEGTGPNILVD------CSKGVQYSMK---LRTLLWLDSSGPLRKELWLKRFAWC*I 598
            FGPE TGPNILVD        K +  ++K   ++   W    GPL  E  ++   +  +
Sbjct: 602 AFGPENTGPNILVDDTLPSEVDKSLLNTVKDSIIQGFQWATREGPLCDEP-IRNVKFKIL 660

Query: 599 STSMM*HFHTDAIHRGGGPNHFPTTRRL 682
              +      + IHRGGG    PT RR+
Sbjct: 661 DAVIA----GEPIHRGGG-QIIPTARRV 683



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 17/40 (42%), Positives = 26/40 (65%)
 Frame = +1

Query: 502 SVLNEIKDSVVAGFQWAAKEGVMAEEICVVLDFNIYDVTL 621
           S+LN +KDS++ GFQWA +EG + +E    + F I D  +
Sbjct: 625 SLLNTVKDSIIQGFQWATREGPLCDEPIRNVKFKILDAVI 664


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +3

Query: 123 EHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV-AEERTSSVSQSRPTSTTV 299
           EH++  AGE+HL+ C+ DL+  +AC+ +  SDP++ +RETV    R   V+++    T+ 
Sbjct: 2   EHVIIAAGEVHLQRCVDDLKRRYACVELNVSDPIIPFRETVIPPPRVDMVNEAITEETSA 61

Query: 300 YS*RLSPCLM 329
            S    P  M
Sbjct: 62  DSRHRIPLRM 71



 Score = 34.3 bits (75), Expect = 0.098
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +2

Query: 431 ARKIWCFGPEGTGPNILVD 487
           A  IW FGP GTGPNIL++
Sbjct: 179 ADHIWAFGPRGTGPNILLN 197


>SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 34.7 bits (76), Expect = 0.074
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 42  DLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEI 164
           DL +  + + R  + DP  +   ++ES E I++G GELHL++
Sbjct: 36  DLDQFSKAINRFTREDPTFRVRFDDESKETIISGMGELHLDV 77


>SB_38648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 23/78 (29%), Positives = 36/78 (46%)
 Frame = +3

Query: 24  EPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIP 203
           E K   +L ++     RL   D  V+   +  G H ++G+GE  LE   + L E    + 
Sbjct: 273 EAKIQVELAEIPYIRSRLV-GDDSVEFDQQRGGTHFISGSGETQLERERRVLTERELKLK 331

Query: 204 IKKSDPVVSYRETVAEER 257
            KK + +  +RE V  ER
Sbjct: 332 -KKLEALRKHREHVRHER 348


>SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)
          Length = 160

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 90  PMVQCINEESGEHIVAGAGELHLEICLKDLEE 185
           P  Q + E   EH+VA +G+L  E C K L +
Sbjct: 26  PTWQRVKEFQNEHLVAQSGKLRFEACKKTLSK 57


>SB_14902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/71 (23%), Positives = 37/71 (52%)
 Frame = -3

Query: 316 LSLHE*TVVLVGRL*ETELVRSSATVSRYDTTGSDFLIGMQAWSSSRSLRQISRWSSPAP 137
           LSL    ++L+G++  + L  S + +S    +  D + G+  W ++RS++  + +  P+ 
Sbjct: 150 LSLFCNVLLLIGKIVASYLSGSLSIISSLVDSAVDLVSGIIFWYTTRSIKTTNFYEYPSG 209

Query: 136 ATMCSPDSSLI 104
            T   P + +I
Sbjct: 210 KTRLEPVAVII 220


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -3

Query: 106  IHCTMGSDLARRLRPSTSLGRSAGFLGS 23
            I C MG D   RLR ST L R   F+GS
Sbjct: 1062 IECNMGFDAVMRLRTSTGL-RPVDFVGS 1088


>SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)
          Length = 809

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 263 LCLSKSPNKHN--RLFMKAQPMPDGLPEDIDEGRVNPRD 373
           + L K  N H+   LF K + +P  L ED++EG V   D
Sbjct: 241 MLLLKRLNLHHLMSLFCKTKKLPVALSEDLEEGEVTEED 279


>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
          Length = 648

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 281 PNKHNRLFMKAQPMPDGLPEDIDEGRVNPRD 373
           PN  N  F+KA P+ DG   D + G +  RD
Sbjct: 413 PNTGNTEFVKAIPIEDGESHDSNYGTIESRD 443


>SB_7387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = +3

Query: 78  AKSDPMVQ---CINEESGEHIVAGAGELHLEICLKDLEEDH 191
           AK DP +    C NE+SGEH  +  GE +L I ++ +++D+
Sbjct: 7   AKIDPNLGTRICFNEDSGEH-YSCHGEENLAISMEGMDKDY 46


>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 27/97 (27%), Positives = 42/97 (43%)
 Frame = +3

Query: 132 VAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEERTSSVSQSRPTSTTVYS*R 311
           ++GA    L+    D  ++  C P   +   VS R T     T   + S   + T  +  
Sbjct: 18  ISGALVCDLDDDCGDESDERGCAPSAATQ--VSGRTTPRATTTPKKATSETMNFTKPAGI 75

Query: 312 LSPCLMVCQRTLMRVA*IPAMTSRLALGILQKSTNTM 422
           LSP ++  QRT +R   IP+ T +  L     ST T+
Sbjct: 76  LSPVVLSTQRTFLRTTPIPS-TVKPRLTTTNSSTVTV 111


>SB_28265| Best HMM Match : Ank (HMM E-Value=6.3e-20)
          Length = 165

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 51  KLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLK 173
           ++V+ L   A  DP  + +N  S  H  A  G+LH   CLK
Sbjct: 119 EVVKWLVEKANCDPGAKTLNRMSAIHFAASGGDLH---CLK 156


>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 366  PAMTSRLALGILQKSTNTMLPKPVRFGALAPRVPA 470
            PA     + GI++ ST  ++P P+R   + P VPA
Sbjct: 1109 PAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPA 1143


>SB_21778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = -1

Query: 576 FSHNSFLSGPLESSHNRVLNFIEY 505
           +SH+S + G +E SH+ V+N++EY
Sbjct: 38  YSHSSVI-GYVEYSHSSVINYVEY 60


>SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 746

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 4/22 (18%)
 Frame = +2

Query: 317 PMPDGLPEDIDEGR----VNPR 370
           P+PDG+ E+IDEG+    +NPR
Sbjct: 721 PVPDGIYEEIDEGQIYDIINPR 742


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,107,875
Number of Sequences: 59808
Number of extensions: 551891
Number of successful extensions: 1351
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)