Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30230
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.70 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.7  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 514 H*VLNSFGAIHQDVGAGTLGAKAPNLTGFGNIVFV 410
           H VL   G  H  V AG +GA+ P+   +GN V V
Sbjct: 891 HFVLK-MGINHGPVTAGVIGARKPHYDIWGNTVNV 924


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 452 GPEGTGPNILVDCSKGVQY 508
           GP   GP+ ++D + GV Y
Sbjct: 294 GPNSQGPSSVIDTNTGVDY 312


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 480 RMLGPVPSGPKHQILRASVTSYSYFSVRY 394
           R   P+P  P H +L A+V   S +  RY
Sbjct: 76  RFRKPLPIEPWHGVLNATVLPNSCYQERY 104


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 480 RMLGPVPSGPKHQILRASVTSYSYFSVRY 394
           R   P+P  P H +L A+V   S +  RY
Sbjct: 76  RFRKPLPIEPWHGVLNATVLPNSCYQERY 104


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 284 NKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEY 418
           N H  +F+    +PD +P D+   R+   +D     +Y ++ Y +
Sbjct: 558 NSHESVFV----VPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGF 598


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 284 NKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEY 418
           N H  +F+    +PD +P D+   R+   +D     +Y ++ Y +
Sbjct: 558 NSHESVFV----VPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGF 598


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 219 PVVSYRETVAEERTS-SVSQSRPTSTTVYS*RLSPCLMVCQRT 344
           P+V +++  +    + + +Q+ P +TT     + PC  +C+ T
Sbjct: 200 PLVGWKDKRSHPAYNMTFAQNGPFNTTTIFVPVKPCPWICELT 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,442
Number of Sequences: 438
Number of extensions: 4498
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)