Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30228
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    77   3e-15
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    26   6.2  
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    25   8.2  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   8.2  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 77.0 bits (181), Expect = 3e-15
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +1

Query: 511 TDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVGFADRKNSRFED 690
           T M E+E  VR+I+M+GL+WG SKLVPVG+G+NK QI  V+EDDKVS+     +   FED
Sbjct: 142 TPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDKVSLEALQEELEGFED 201

Query: 691 F 693
           +
Sbjct: 202 Y 202



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
 Frame = +3

Query: 66  MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQI 242
           M   D+ +  GL  LN +L +KS++ GY PSQAD  VF+ VG AP  A  P+  RWY QI
Sbjct: 1   MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQI 60

Query: 243 ASY 251
           A+Y
Sbjct: 61  ATY 63



 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 29/116 (25%), Positives = 49/116 (42%)
 Frame = +2

Query: 356 VDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSILLDVKPWDDKPI*RKWKT 535
           +DLFGS                 + Y  KK+ KP  + KS + LDVKPWDD+    + + 
Sbjct: 91  IDLFGSDEEEDPEAERIKAERVAE-YNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEK 149

Query: 536 KYALLKWKAFSGEPPNLCLLGMA*INCKLCVSSRTTKFLLDLLTEKIQDLKIFVQS 703
               ++          L  +G      ++ +     K  L+ L E+++  + +VQS
Sbjct: 150 AVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDKVSLEALQEELEGFEDYVQS 205


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 540 YLVFHFLHIGLSSHGLTSRRIEDLAMRAGFLDFL 439
           YLV +  HIGLSS+ L + R +  A+    LD L
Sbjct: 99  YLVKYGKHIGLSSNWLIADRNDTQAIMKRLLDSL 132


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 42  KVATLKETMAVGDVKTAQGLNDLNQYLAEKSYV 140
           K  TLK  + V DVKT  G +  N    E  Y+
Sbjct: 251 KTRTLKGGVVVTDVKTGSGASATNGKKVEMRYI 283


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 297 PPVLNPRLPPQQRKTTMTT 353
           PPVL P LPP Q  T  T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,015
Number of Sequences: 5004
Number of extensions: 56671
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)