Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30228
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 77 2e-14
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 75 4e-14
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 75 4e-14
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 36 0.024
05_01_0486 - 4047055-4049013 29 2.8
02_04_0193 - 20801959-20802583,20803372-20803448,20803530-208036... 29 2.8
09_04_0232 - 15882589-15882720,15882799-15882889,15882987-158830... 28 8.5
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 76.6 bits (180), Expect = 2e-14
Identities = 35/48 (72%), Positives = 40/48 (83%)
Frame = +1
Query: 511 TDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSV 654
TDMK++E VR+++MEGL WGASKLVPVGYGI KLQIM I DD VSV
Sbjct: 149 TDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSV 196
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/57 (43%), Positives = 36/57 (63%)
Frame = +3
Query: 78 DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIAS 248
D+ TA GL L Q+L+ K+YVSG S+ D++VF V P A P+ RWY+ +A+
Sbjct: 7 DLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAA 63
Score = 36.3 bits (80), Expect = 0.024
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +2
Query: 434 ADKKSKKPALIAKSSILLDVKPWDDK 511
A K S K KSS+LLDVKPWDD+
Sbjct: 123 ASKASSKKKESGKSSVLLDVKPWDDE 148
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 75.4 bits (177), Expect = 4e-14
Identities = 35/48 (72%), Positives = 39/48 (81%)
Frame = +1
Query: 511 TDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSV 654
TDM ++E VR ++MEGLLWGASKLVPVGYGI KLQIM I DD VSV
Sbjct: 154 TDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSV 201
Score = 51.6 bits (118), Expect = 6e-07
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = +3
Query: 78 DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTR 257
+V + GL L++YL +SY+SGY S D+ V+ AP+++ +V RW+ I + R
Sbjct: 7 NVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLR 66
Query: 258 LN 263
L+
Sbjct: 67 LS 68
Score = 35.9 bits (79), Expect = 0.032
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +2
Query: 425 KAYADKKSKKPALIAKSSILLDVKPWDDK 511
+A A K S K KSS+LLDVKPWDD+
Sbjct: 125 RAAAVKASGKKKESGKSSVLLDVKPWDDE 153
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 75.4 bits (177), Expect = 4e-14
Identities = 35/48 (72%), Positives = 39/48 (81%)
Frame = +1
Query: 511 TDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSV 654
TDM ++E VR ++MEGLLWGASKLVPVGYGI KLQIM I DD VSV
Sbjct: 170 TDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSV 217
Score = 57.6 bits (133), Expect = 9e-09
Identities = 25/64 (39%), Positives = 41/64 (64%)
Frame = +3
Query: 66 MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA 245
+ + +V + GL L++YL +SY+SGY S+ D+ VF + APAA+ +V RWY+ I+
Sbjct: 22 ITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHIS 81
Query: 246 SYTR 257
+ R
Sbjct: 82 ALLR 85
Score = 35.9 bits (79), Expect = 0.032
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +2
Query: 425 KAYADKKSKKPALIAKSSILLDVKPWDDK 511
+A A K S K KSS+LLDVKPWDD+
Sbjct: 141 RAAAVKASGKKKESGKSSVLLDVKPWDDE 169
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 36.3 bits (80), Expect = 0.024
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Frame = +3
Query: 99 LNDLNQYLAEKSYV--SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 242
L +LNQ L++KS + +G+ PS AD+ VF + G+ PHVLRW + I
Sbjct: 76 LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132
>05_01_0486 - 4047055-4049013
Length = 652
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -1
Query: 334 RCWGGSRGFSTGGQWAGALRPCFAFSRVYEAI*LYHRSTWGRLAAGALP 188
R W +G S G + L CF V+ + + + WG+ + GALP
Sbjct: 408 RVWRTIKGTSEGWKSVAWLTSCFFPGIVFVILTVLNSILWGKKSTGALP 456
>02_04_0193 -
20801959-20802583,20803372-20803448,20803530-20803646,
20804147-20804250,20804359-20804428,20804547-20804644,
20804747-20804840,20805269-20805359,20805453-20805545,
20805635-20805960,20806162-20806641
Length = 724
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +3
Query: 153 PSQADVQVFEQVGKAPA-ANLPHVLRWYNQIASYTRLNAKHGLRAPAH*PPVLNPRLPPQ 329
P ++ F KA A + ++ W + + SY+R + R+P+ P P PP
Sbjct: 528 PDVIKIETFYHADKAKTEACILDLVLWLHHLISYSRPSNGGRSRSPSRSPVRSPPLTPPH 587
Query: 330 QRKTTMTTT 356
Q TT +++
Sbjct: 588 QVPTTTSSS 596
>09_04_0232 -
15882589-15882720,15882799-15882889,15882987-15883087,
15883494-15883592,15883693-15883830,15883918-15884508,
15884819-15884989,15885068-15885203,15885561-15885592,
15886280-15886336,15886434-15886686,15886762-15886850,
15887181-15887234,15887498-15887689,15887777-15887938
Length = 765
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +3
Query: 96 GLNDLNQYLAEKSYVSGYTPS--QADVQVFEQVGKAP-AANLPHVLRWYNQIASYTRLNA 266
G ND++ A +S P+ +V + E++ +A + +P+V+ W N +SY +
Sbjct: 97 GDNDVSDPQAFSCLISPPFPTIVYLEVPIGEKLAQAVHSKGIPYVIYWRNSFSSYAASHF 156
Query: 267 KHGL 278
+H L
Sbjct: 157 RHAL 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,834,813
Number of Sequences: 37544
Number of extensions: 391268
Number of successful extensions: 958
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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