Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30228
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   4e-17
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   7e-08
SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)               45   7e-05
SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)                 44   9e-05
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   5.0  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 38/61 (62%), Positives = 47/61 (77%)
 Frame = +1

Query: 511 TDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVGFADRKNSRFED 690
           TDM EME  VR+I+ +GLLWGASKLVP+ YGI KLQI  V+EDDK+S  F + +  +FED
Sbjct: 153 TDMAEMEKLVRSIQADGLLWGASKLVPLAYGIKKLQITVVVEDDKISTDFLEEEICKFED 212

Query: 691 F 693
           F
Sbjct: 213 F 213



 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 36/62 (58%), Positives = 44/62 (70%)
 Frame = +3

Query: 66  MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA 245
           M  GD+K+  GL+ LN +L E+SY+ GY PSQAD  VFE +  AP A+LPH LRWYN I 
Sbjct: 1   MGFGDLKSQAGLSALNTFLTERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIV 60

Query: 246 SY 251
           SY
Sbjct: 61  SY 62



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 39/117 (33%), Positives = 54/117 (46%)
 Frame = +2

Query: 356 VDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSILLDVKPWDDKPI*RKWKT 535
           +DLFGS                LKAY +KK+KK  +IAKS+I+LDVKPWDD+    + + 
Sbjct: 101 IDLFGSDDEEEEKEAARIRQERLKAYEEKKAKKKPVIAKSNIMLDVKPWDDETDMAEMEK 160

Query: 536 KYALLKWKAFSGEPPNLCLLGMA*INCKLCVSSRTTKFLLDLLTEKIQDLKIFVQSV 706
               ++          L  L       ++ V     K   D L E+I   + FVQSV
Sbjct: 161 LVRSIQADGLLWGASKLVPLAYGIKKLQITVVVEDDKISTDFLEEEICKFEDFVQSV 217


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = +3

Query: 147 YTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 251
           Y PSQAD  VFE +  AP A+LPH LRWYN I SY
Sbjct: 2   YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36


>SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)
          Length = 416

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 22/39 (56%), Positives = 25/39 (64%)
 Frame = +1

Query: 577 SKLVPVGYGINKLQIMCVIEDDKVSVGFADRKNSRFEDF 693
           +KLV + YG+ KLQI CVIED KVS      K   FEDF
Sbjct: 116 TKLVEIAYGLKKLQITCVIEDAKVSTDDLIDKLCEFEDF 154


>SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)
          Length = 301

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 22/38 (57%), Positives = 24/38 (63%)
 Frame = +1

Query: 580 KLVPVGYGINKLQIMCVIEDDKVSVGFADRKNSRFEDF 693
           KLV + YG+ KLQI CVIED KVS      K   FEDF
Sbjct: 2   KLVEIAYGLKKLQITCVIEDAKVSTDDLIDKLCEFEDF 39


>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1636

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 99  LNDLNQYLAEKSYVSGYTPSQADVQ-VFEQVGK 194
           +N L + L EKS+  GY+P+ +DVQ V + V K
Sbjct: 62  VNKLPKGLIEKSWNFGYSPNTSDVQTVMQNVAK 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,259,293
Number of Sequences: 59808
Number of extensions: 426437
Number of successful extensions: 994
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)