Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30228
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical p...    75   4e-14
L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical pr...    75   4e-14
AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical
           protein Y41E3.10a protein.
          Length = 263

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 36/61 (59%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
 Frame = +1

Query: 511 TDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSV-GFADRKNSRFE 687
           TD+ EME  VR+IEM+GL+WG +KL+P+GYGI KLQI+ VIED KVSV    ++    FE
Sbjct: 190 TDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEKITGDFE 249

Query: 688 D 690
           D
Sbjct: 250 D 250



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 38/117 (32%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
 Frame = +2

Query: 359 DLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSILLDVKPWDDKPI*RKWKTK 538
           DLFGS                L AYA KK+ K   IAKSS++LDVKPWDD+    + +  
Sbjct: 139 DLFGSEDEEEDEEKKKVVEERLAAYAAKKATKAGPIAKSSVILDVKPWDDETDLGEMEKL 198

Query: 539 YALLKWKAFSGEPPNLCLLGMA*INCKLCVSSRTTKFLLDLLTEKIQ-DLKIFVQSV 706
              ++          L  +G      ++       K  +D L EKI  D +  VQSV
Sbjct: 199 VRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEKITGDFEDHVQSV 255


>L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical
           protein F54H12.6 protein.
          Length = 213

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 36/61 (59%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
 Frame = +1

Query: 511 TDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSV-GFADRKNSRFE 687
           TD+ EME  VR+IEM+GL+WG +KL+P+GYGI KLQI+ VIED KVSV    ++    FE
Sbjct: 140 TDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEKITGDFE 199

Query: 688 D 690
           D
Sbjct: 200 D 200



 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
 Frame = +3

Query: 72  VGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIAS 248
           V DVK+  GL   N  LAE+++ +G+  S  D Q+F  +G AP A+  P+V RWY  +AS
Sbjct: 2   VADVKSPAGLAAFNTTLAEQAFATGFVLSGEDAQLFAALGSAPNASTYPNVARWYANVAS 61

Query: 249 YTRLNAK 269
           YT    K
Sbjct: 62  YTDAERK 68



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
 Frame = +2

Query: 359 DLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSILLDVKPWDDKPI*RKWKTK 538
           DLFGS                L AYA+KK+KK   IAKSS++LDVKPWDD+    + +  
Sbjct: 89  DLFGSDDEEEDAEKAKIVEERLAAYAEKKAKKAGPIAKSSVILDVKPWDDETDLGEMEKL 148

Query: 539 YALLKWKAFSGEPPNLCLLGMA*INCKLCVSSRTTKFLLDLLTEKIQ-DLKIFVQSV 706
              ++          L  +G      ++       K  +D L EKI  D +  VQSV
Sbjct: 149 VRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEKITGDFEDHVQSV 205


>AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical
           protein W07E6.2 protein.
          Length = 473

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +1

Query: 550 EMEGLLWGASKLVPVGYGINKLQIMC----VIEDDKVSVGFADRKNSRFED 690
           E E  L G+  LVPV    N+LQI+C       DD V + F   + +   D
Sbjct: 14  EDENELGGSGILVPVDISTNELQILCNQLLGSSDDPVPISFFTTEGAEIVD 64


>Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical
           protein C28A5.2 protein.
          Length = 1218

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
 Frame = -2

Query: 642 VVLDDTHNLQFIYAIPNRHKFGGSPEKAFHFNSAYLVFHF-------LHIGLSSHGL 493
           VV DD +       +P    F   P K+F    AY VFHF         IG  SHGL
Sbjct: 832 VVYDDMNVKNTSVVVPIGGNFNNLP-KSFQLGDAYKVFHFSSYKDLICRIGGFSHGL 887


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,741,200
Number of Sequences: 27780
Number of extensions: 321056
Number of successful extensions: 837
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)