Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30227
(729 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 6e-19
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 63 3e-10
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 60 1e-09
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 4e-09
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 58 1e-08
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 52 6e-07
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 49 4e-06
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 44 1e-04
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 36 0.044
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 34 0.10
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 34 0.10
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 31 0.72
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 31 0.96
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 30 1.7
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011) 29 3.9
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 29 3.9
SB_44832| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 8.9
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 28 8.9
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 91.5 bits (217), Expect = 6e-19
Identities = 52/149 (34%), Positives = 75/149 (50%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 420
P + +PFNKNFY+ HP + K+S E+++ R K + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKTLGLHLASHCAHK*PKPPI 600
+ ++ + Y +PT IQ Q PIA+SG+ + K GKT L H +P +
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAF-LWPALVHIMDQPEL 585
Query: 601 RRGDGPIALVLALPES*HQQIQAKFAARF 687
+ GDGPI L+ A QQI + A RF
Sbjct: 586 QVGDGPIVLICAPTRELCQQIYTE-ARRF 613
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 62.9 bits (146), Expect = 3e-10
Identities = 40/131 (30%), Positives = 61/131 (46%)
Frame = +1
Query: 271 FNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 450
F ++YD + V + S V+E R K+ + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 451 YKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKTLGLHLASHCAHK*PKPPIRRGDGPIALV 630
++ PTPIQ Q MSG+ + + GKTL L C K P GD P+AL+
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPL-CMLLRTKAPSNPGDTPVALI 150
Query: 631 LALPES*HQQI 663
L QQ+
Sbjct: 151 LTPTRELMQQV 161
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = +1
Query: 313 RSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 480
R +EV+ YR ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 58.8 bits (136), Expect = 4e-09
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 432
V QPF K+FY P + K +P E +E+R E + V G P++ + + +
Sbjct: 59 VVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILD 118
Query: 433 GVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKTLGLHLASHC 573
+K Y++PTPIQAQ P+ MSG+ +A P + L + + C
Sbjct: 119 VLKKNSYEKPTPIQAQAIPVIMSGRDMIA-IVMTPTRELAIQIHREC 164
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 57.6 bits (133), Expect = 1e-08
Identities = 25/74 (33%), Positives = 42/74 (56%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 465
Y HPT+ + +V++ R+K E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 466 PIQAQGWPIAMSGK 507
PIQ Q P+ +SG+
Sbjct: 221 PIQMQVLPVLLSGR 234
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 51.6 bits (118), Expect = 6e-07
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Frame = +1
Query: 337 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*L 516
+R ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + + +
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142
Query: 517 A*PKRVPGKTLGLHLASHCAHK*PKPPIRRGD----GPIALVLALPES*HQQIQ 666
+ GKT + P I R + GP AL+LA QQI+
Sbjct: 143 GVAETGSGKTAAFAIPL-LVWIMGLPKIERDNDADQGPYALILAPTRELAQQIE 195
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +1
Query: 325 EVEEYRNKHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 492
++ +R++ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 493 AMSG 504
G
Sbjct: 197 MAHG 200
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/72 (37%), Positives = 39/72 (54%)
Frame = +1
Query: 331 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI 510
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G+
Sbjct: 692 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 750
Query: 511 *LA*PKRVPGKT 546
+A + GKT
Sbjct: 751 VMACAQTGSGKT 762
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/72 (37%), Positives = 39/72 (54%)
Frame = +1
Query: 331 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI 510
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G+
Sbjct: 115 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 173
Query: 511 *LA*PKRVPGKT 546
+A + GKT
Sbjct: 174 VMACAQTGSGKT 185
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +1
Query: 361 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPG 540
VSG I F E F + + + GY+ PTP+Q PI M+G+ +A + G
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSG 528
Query: 541 KT 546
KT
Sbjct: 529 KT 530
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 35.5 bits (78), Expect = 0.044
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKTL 549
++ F + G+ G+ PT IQ QG P+A+SG+ L K GKTL
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTL 102
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 34.3 bits (75), Expect = 0.10
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKT 546
FE+ + G+ G+ +P+PIQ + P+A++G+ LA K GKT
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKT 98
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 34.3 bits (75), Expect = 0.10
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKT 546
FE+ + G+ G+ +P+PIQ + P+A++G+ LA K GKT
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKT 98
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 32.3 bits (70), Expect = 0.41
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKT 546
I FE+ + + + V GYK+PTP+Q PI + +A + GKT
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKT 926
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 31.5 bits (68), Expect = 0.72
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 430 QGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKTLGLHL 561
+ V +G+ PTPIQA P+A+ GK A GKT L
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFML 66
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 31.1 bits (67), Expect = 0.96
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 346 KHEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
KHEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++
Sbjct: 85 KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLA 139
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +1
Query: 373 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 486
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 29
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -3
Query: 268 VGVKQIPIWASHVLPSREF 212
VGV+ I WAS++LPSR+F
Sbjct: 10 VGVRDIEQWASNLLPSRQF 28
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 319 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 450
P+E + + KH++ V+ VE + +Q +E F + ++Q VK G
Sbjct: 252 PFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQ-VKDTG 294
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 203 HQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGY 93
H L YC RC T CCLLQ++++ ++G+
Sbjct: 484 HLQQPSLAAYC-RCITILTTAIACCLLQVYHNTYNGH 519
>SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)
Length = 1199
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 227 QNMRRPDWDLFHSNLSTKTFMIHILQFSKD 316
+N RR WD FHSN+S + H+ F D
Sbjct: 768 RNKRR--WDSFHSNVSADSGSAHMFDFDTD 795
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 331 EEYRNK-HEVTVSGVEVHNPIQYFEEANFPDY 423
EE NK H++ + + +HNP YFE+ + DY
Sbjct: 234 EEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_44832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 278 LLKGWSETNPNLGVACSAL 222
LLKGW TN N +AC+A+
Sbjct: 150 LLKGWGATNFNHAMACAAV 168
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -2
Query: 269 GWSETNPNLGVACS--ALQRILFSHQSLQILQIYCHRCQTETNYRRICCLLQIWN-HRFH 99
GW T + S AL+RI + ++ C +YRR CC L +W H +
Sbjct: 181 GWRVTLRVIAATTSQQALERIATPVTTSKLRCSTTQECCVRVDYRRKCC-LHVWRVHTTN 239
Query: 98 GYYSN 84
Y+S+
Sbjct: 240 TYWSS 244
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 430 QGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKT 546
+G+ G+++P+PIQ + P+ G +A K GKT
Sbjct: 26 RGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKT 64
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,932,118
Number of Sequences: 59808
Number of extensions: 499223
Number of successful extensions: 1336
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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