Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30227
(729 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 120 7e-28
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 109 1e-24
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 109 1e-24
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 90 1e-18
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 90 1e-18
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 85 6e-17
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 79 3e-15
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 79 3e-15
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 79 3e-15
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 75 6e-14
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 63 2e-10
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 56 2e-08
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 49 3e-06
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 47 1e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 44 8e-05
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 43 2e-04
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 42 3e-04
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 42 6e-04
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 38 0.005
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 38 0.009
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 37 0.016
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 36 0.028
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 36 0.036
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 36 0.036
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 36 0.036
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 35 0.048
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 35 0.048
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 35 0.048
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 35 0.064
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 35 0.064
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 34 0.084
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 33 0.15
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 33 0.15
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 32 0.34
At2g25460.1 68415.m03049 expressed protein 30 1.4
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 30 1.8
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 29 2.4
At4g35250.1 68417.m05010 vestitone reductase-related low similar... 29 3.2
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 29 3.2
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 29 4.2
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 29 4.2
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 29 4.2
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 29 4.2
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 28 5.5
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 5.5
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 5.5
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 28 7.3
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 7.3
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 7.3
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 7.3
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 28 7.3
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 9.6
At1g61400.1 68414.m06919 S-locus protein kinase, putative simila... 27 9.6
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 120 bits (290), Expect = 7e-28
Identities = 64/148 (43%), Positives = 85/148 (57%)
Frame = +1
Query: 244 RLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 423
+L L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDY
Sbjct: 50 KLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDY 109
Query: 424 VQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKTLGLHLASHCAHK*PKPPIR 603
V + VK G+ EPTPIQ+QGWP+AM G+ + + GKTL +L H +P +
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLS-YLLPAIVHVNAQPMLA 168
Query: 604 RGDGPIALVLALPES*HQQIQAKFAARF 687
GDGPI LVLA QIQ + A++F
Sbjct: 169 HGDGPIVLVLAPTRELAVQIQQE-ASKF 195
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 109 bits (263), Expect = 1e-24
Identities = 55/142 (38%), Positives = 83/142 (58%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 420
P+ F +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKTLGLHLASHCAHK*PKPPI 600
+ + + +G+ EPTPIQAQGWP+A+ G+ + + GKTL +L H +P +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA-YLLPALVHVSAQPRL 233
Query: 601 RRGDGPIALVLALPES*HQQIQ 666
+ DGPI L+LA QIQ
Sbjct: 234 GQDDGPIVLILAPTRELAVQIQ 255
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 109 bits (263), Expect = 1e-24
Identities = 55/142 (38%), Positives = 83/142 (58%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 420
P+ F +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKTLGLHLASHCAHK*PKPPI 600
+ + + +G+ EPTPIQAQGWP+A+ G+ + + GKTL +L H +P +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA-YLLPALVHVSAQPRL 233
Query: 601 RRGDGPIALVLALPES*HQQIQ 666
+ DGPI L+LA QIQ
Sbjct: 234 GQDDGPIVLILAPTRELAVQIQ 255
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 90.2 bits (214), Expect = 1e-18
Identities = 50/136 (36%), Positives = 71/136 (52%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +PF KNFY + + + V YR + E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKTLGLHLASHCAHK*PKPPIRRGDG 615
+K + Y++P PIQAQ PI MSG+ + K GKTLG L H +PP+ GDG
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPM-LRHIKDQPPVEAGDG 469
Query: 616 PIALVLALPES*HQQI 663
PI LV+A QQI
Sbjct: 470 PIGLVMAPTRELVQQI 485
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 90.2 bits (214), Expect = 1e-18
Identities = 49/138 (35%), Positives = 72/138 (52%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +PF KNFY + + + EV YR + E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKTLGLHLASHCAHK*PKPPIRRGDG 615
+K + Y++P PIQ Q PI MSG+ + K GKTLG L H +PP+ GDG
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPM-LRHIKDQPPVEAGDG 602
Query: 616 PIALVLALPES*HQQIQA 669
PI LV+A QQI +
Sbjct: 603 PIGLVMAPTRELVQQIHS 620
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 84.6 bits (200), Expect = 6e-17
Identities = 40/127 (31%), Positives = 67/127 (52%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F +
Sbjct: 183 IDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSA 242
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKTLGLHLASHCAHK*PKPPIRRGDG 615
+K Y++PT IQ Q PI +SG+ + K GKT L H +P ++R +G
Sbjct: 243 IKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPM-IVHIMDQPELQRDEG 301
Query: 616 PIALVLA 636
PI ++ A
Sbjct: 302 PIGVICA 308
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 79.0 bits (186), Expect = 3e-15
Identities = 53/146 (36%), Positives = 72/146 (49%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGKI*LA*PKRVPGKTLGLHLASHCAHK*PKPPIRRGDGPIALVLALPES* 651
QAQ WPIAM G+ +A K GKTLG + + + R GP LVL+
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM--GPTILVLSPTREL 242
Query: 652 HQQIQAKFAARFLGTHHSLCS*HRGG 729
QIQ + A +F + C+ GG
Sbjct: 243 ATQIQEE-AVKFGRSSRISCTCLYGG 267
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 79.0 bits (186), Expect = 3e-15
Identities = 53/146 (36%), Positives = 72/146 (49%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGKI*LA*PKRVPGKTLGLHLASHCAHK*PKPPIRRGDGPIALVLALPES* 651
QAQ WPIAM G+ +A K GKTLG + + + R GP LVL+
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM--GPTILVLSPTREL 242
Query: 652 HQQIQAKFAARFLGTHHSLCS*HRGG 729
QIQ + A +F + C+ GG
Sbjct: 243 ATQIQEE-AVKFGRSSRISCTCLYGG 267
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 79.0 bits (186), Expect = 3e-15
Identities = 53/146 (36%), Positives = 72/146 (49%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGKI*LA*PKRVPGKTLGLHLASHCAHK*PKPPIRRGDGPIALVLALPES* 651
QAQ WPIAM G+ +A K GKTLG + + + R GP LVL+
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM--GPTILVLSPTREL 242
Query: 652 HQQIQAKFAARFLGTHHSLCS*HRGG 729
QIQ + A +F + C+ GG
Sbjct: 243 ATQIQEE-AVKFGRSSRISCTCLYGG 267
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 74.5 bits (175), Expect = 6e-14
Identities = 54/156 (34%), Positives = 77/156 (49%), Gaps = 4/156 (2%)
Frame = +1
Query: 274 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 441
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 442 TMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKTLGLHLASHCAHK*PKPPIRRGDGPI 621
+ G+ PTPIQAQ WPIA+ + +A K GKTLG + + + + R +GP
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR--NGPT 509
Query: 622 ALVLALPES*HQQIQAKFAARFLGTHHSLCS*HRGG 729
L+LA QIQ + A RF + C+ GG
Sbjct: 510 VLILAPTRELATQIQDE-ALRFGRSSRISCTCLYGG 544
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 63.3 bits (147), Expect = 2e-10
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 2/130 (1%)
Frame = +1
Query: 250 GFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 429
G +P + ++ P V K S +++ R + +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 430 QGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKTL--GLHLASHCAHK*PKPPIR 603
+ +K G PTPIQ QG P+ +SG+ + GKTL L + + PI
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIA 169
Query: 604 RGDGPIALVL 633
G+GPIALV+
Sbjct: 170 AGEGPIALVI 179
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 56.0 bits (129), Expect = 2e-08
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 465
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 466 PIQAQGWPIAMSGKI*LA*PKRVPGKTL--GLHLASHCAHK*PKPPIRRGDGPIALVL 633
PIQ QG P+ ++G+ + GKTL L + + PI G+GPI L++
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIV 228
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 49.2 bits (112), Expect = 3e-06
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Frame = +1
Query: 316 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 489
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 490 IAMSGKI*LA*PKRVPGKTLG--LHLASHCAHK*PKPPIRRGDGPIALVLA 636
A++GK LA GKT + + S C + P + P+A+VLA
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLA 193
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 46.8 bits (106), Expect = 1e-05
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Frame = +1
Query: 337 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*L 516
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + + +
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 517 A*PKRVPGKTLG--LHLASHCAHK*PKPPIRRGDGPIALVLALPES*HQQIQ---AKFAA 681
+ GKT L + ++ + P +GP A+V+A QQI+ KF A
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKF-A 413
Query: 682 RFLG 693
+LG
Sbjct: 414 HYLG 417
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 44.4 bits (100), Expect = 8e-05
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +1
Query: 340 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 508 I*LA*PKRVPGKT 546
A GKT
Sbjct: 180 ECFACAPTGSGKT 192
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +1
Query: 325 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 498
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 499 SGKI*LA*PKRVPGKTL 549
G+ + K GKTL
Sbjct: 150 DGRDLIGIAKTGSGKTL 166
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +1
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKTLG 552
V + G+ P+PIQAQ WPIAM + +A K GKTLG
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLG 282
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 331 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 420
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +1
Query: 358 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
TV GV H F E N + + +T+GYK+PTPIQA P+A++G+
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR 205
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Frame = +1
Query: 262 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 438
+ PF + +P P ++ + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 439 KTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKT 546
+ Y +PTP+Q PI + G+ +A + GKT
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKT 210
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKT 546
FE N V +K GYK PTPIQ + P+ +SG +A + GKT
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKT 79
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 36.7 bits (81), Expect = 0.016
Identities = 26/75 (34%), Positives = 34/75 (45%)
Frame = +1
Query: 325 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 505 KI*LA*PKRVPGKTL 549
K +A K GKTL
Sbjct: 84 KDVVARAKTGSGKTL 98
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 35.9 bits (79), Expect = 0.028
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = +1
Query: 268 PF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 444
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 445 MGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKT 546
Y +PTP+Q PI +G+ +A + GKT
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKT 197
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 35.5 bits (78), Expect = 0.036
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKT 546
FE+ + G+ G++ P+PIQ + PIA++G+ LA K GKT
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKT 182
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 35.5 bits (78), Expect = 0.036
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKT 546
FE+ + G+ G++ P+PIQ + PIA++G+ LA K GKT
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKT 182
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 35.5 bits (78), Expect = 0.036
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 445 MGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKTLGLHLASHCAH-K*PKPPIRRGDGPI 621
MG++ PT +QAQ P+ +SG+ L GKT+ +LA H + P + R G
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIA-YLAPLIHHLQGHSPKVDRSHGTF 106
Query: 622 ALVL 633
ALV+
Sbjct: 107 ALVI 110
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 35.1 bits (77), Expect = 0.048
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKT 546
FE+ + +G+ G+++P+PIQ + PIA++G LA K GKT
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKT 175
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 35.1 bits (77), Expect = 0.048
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKT 546
FE+ + +G+ G+++P+PIQ + PIA++G LA K GKT
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKT 175
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 35.1 bits (77), Expect = 0.048
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKT 546
FE+ + +G+ G+++P+PIQ + PIA++G LA K GKT
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKT 205
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 34.7 bits (76), Expect = 0.064
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRV 534
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ + +A +
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 535 PGKT 546
GKT
Sbjct: 199 SGKT 202
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 34.7 bits (76), Expect = 0.064
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRV 534
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ + +A +
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 535 PGKT 546
GKT
Sbjct: 199 SGKT 202
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 34.3 bits (75), Expect = 0.084
Identities = 25/95 (26%), Positives = 40/95 (42%)
Frame = +1
Query: 265 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 444
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 445 MGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKTL 549
MG+ T IQA+ P M G+ L + GKTL
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTL 206
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 33.5 bits (73), Expect = 0.15
Identities = 28/102 (27%), Positives = 42/102 (41%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKTLGLHLASHCA 576
F++ +G++ G+K T +Q P+ + GK LA K GKT+ L S A
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 577 HK*PKPPIRRGDGPIALVLALPES*HQQIQAKFAARFLGTHH 702
P R P +VL + + QA A L +H
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYH 183
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKT 546
PI+ F++ D V +GV GYK+P+ IQ + + G+ +A + GKT
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKT 73
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +1
Query: 373 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKT 546
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK + + GKT
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKT 60
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -2
Query: 206 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 90
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -3
Query: 268 VGVKQIPIWASHVLPSREFFF 206
VGVK+I W + +LPSR+F F
Sbjct: 81 VGVKEIEGWTARLLPSRQFGF 101
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 430 QGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKTLGLHLAS 567
+ +K GY+ T +Q PI + GK LA K GKT+ L S
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPS 112
>At4g35250.1 68417.m05010 vestitone reductase-related low similarity
to vestitone reductase [Medicago sativa subsp. sativa]
GI:973249
Length = 395
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 514 LA*PKRVPGKTLGLHLASHCAHK*PKPPIRRGD--GPIALV 630
L+ P+ +P +G+H CA P+ PI+ D G +AL+
Sbjct: 132 LSKPETIPATLVGIHTVIDCATGRPEEPIKTVDWEGKVALI 172
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKTLGLHL 561
FE ++ + K +G ++PTP+Q P ++G+ L + GKT L
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFAL 114
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 268 VGVKQIPIWASHVLPSREF 212
VGVK+I W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At3g14810.1 68416.m01871 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 853
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = -3
Query: 247 IWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKF-GTTVSTAIIPITRH- 74
+W VL + F F K R ++S A R ++ VA + T+ ++ + H
Sbjct: 355 LWLGLVLLAWHFLFDKKVERETRSTALRYVTRVLVCLLVALIIWLVKTILVKVLASSFHM 414
Query: 73 -DYFSDLVEDVYLNYGFFLTQGPP 5
YF + E ++ Y GPP
Sbjct: 415 STYFDRIQESLFTQYVIETLSGPP 438
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 268 VGVKQIPIWASHVLPSREF 212
VGVK+I W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 268 VGVKQIPIWASHVLPSREF 212
VGVK+I W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 28.3 bits (60), Expect = 5.5
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 1/127 (0%)
Frame = +1
Query: 328 VEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+E+ ++ + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 508 I*LA*PKRVPGKTLGLHL-ASHCAHK*PKPPIRRGDGPIALVLALPES*HQQIQAKFAAR 684
L + GKTL + A K P R G G V+ + + IQ K A
Sbjct: 128 DVLGAARTGSGKTLAFLIPAVELLFKERFSP-RNGTG----VIVICPTRELAIQTKNVAE 182
Query: 685 FLGTHHS 705
L HHS
Sbjct: 183 ELLKHHS 189
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 277 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 432
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 277 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 432
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPGKTL 549
++ F + D ++G+K Y + T +Q+ P A+ G+ L + GKTL
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTL 123
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 462
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 463 TPIQAQGWPIAMS 501
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 462
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 463 TPIQAQGWPIAMS 501
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 462
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 463 TPIQAQGWPIAMS 501
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
FEE PD + ++ G+ PT +Q+ P + G
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG 147
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 87 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 233
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
>At1g61400.1 68414.m06919 S-locus protein kinase, putative similar
to KI domain interacting kinase 1 [Zea mays]
gi|2735017|gb|AAB93834; contains S-locus glycoprotein
family domain, Pfam:PF00954
Length = 821
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = -2
Query: 659 CWC*LSG-SAKTKAIGPS--PLRIGG---LGYLCAQWLARCRPNVL 540
CWC G + +A+G S P +G +G LC Q+ RPN L
Sbjct: 727 CWCGARGVNLLDQALGDSCHPYEVGRCVQIGLLCVQYQPADRPNTL 772
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,127,060
Number of Sequences: 28952
Number of extensions: 356635
Number of successful extensions: 1102
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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