BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30226 (500 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23 SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71 SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 31 0.71 SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23) 30 1.2 SB_22833| Best HMM Match : ATP-synt_8 (HMM E-Value=5.9) 30 1.2 SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2 SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 29 2.2 SB_20444| Best HMM Match : F-box (HMM E-Value=5.2) 29 2.2 SB_51094| Best HMM Match : VWA (HMM E-Value=0) 25 2.9 SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35) 25 3.1 SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22) 28 3.8 SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8 SB_25690| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8 SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17) 28 5.0 SB_7889| Best HMM Match : VWC (HMM E-Value=2.6) 28 5.0 SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 27 6.6 SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 27 6.6 SB_58762| Best HMM Match : VWC (HMM E-Value=2.8e-06) 27 8.7 SB_44500| Best HMM Match : DUF1693 (HMM E-Value=4) 27 8.7 SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7 SB_197| Best HMM Match : LISCH7 (HMM E-Value=1.3) 27 8.7 SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 8.7 SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17) 27 8.7 >SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 210 Score = 32.3 bits (70), Expect = 0.23 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = +3 Query: 129 TCVSQNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 248 T T P+++ A P+ + A PE + A PE++ P+ Sbjct: 26 TAAPMETTAAPDATTAAPDATTAAPEATTAAPEATTAAPE 65 Score = 31.9 bits (69), Expect = 0.31 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +3 Query: 129 TCVSQNTGTCPESSCACPEISCACPETSCACPESSCLCP 245 T T P+++ A PE + A PE + A PE++ P Sbjct: 33 TAAPDATTAAPDATTAAPEATTAAPEATTAAPEATTAAP 71 Score = 28.7 bits (61), Expect = 2.8 Identities = 13/39 (33%), Positives = 18/39 (46%) Frame = +3 Query: 129 TCVSQNTGTCPESSCACPEISCACPETSCACPESSCLCP 245 T T PE++ A PE + A PE + A P + P Sbjct: 40 TAAPDATTAAPEATTAAPEATTAAPEATTAAPVETTAGP 78 >SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 274 Score = 30.7 bits (66), Expect = 0.71 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +3 Query: 141 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 248 + T PE + A PE + PE + CPE + P+ Sbjct: 84 EGNSTSPEGNSASPEGNSTSPEGNSTCPEGNSTSPE 119 Score = 29.9 bits (64), Expect = 1.2 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +3 Query: 141 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 248 + T PE + A PE + A PE + A PE + P+ Sbjct: 133 EGNSTSPEGNSASPEGNSASPEGNSASPEGNSTSPE 168 Score = 29.1 bits (62), Expect = 2.2 Identities = 11/36 (30%), Positives = 17/36 (47%) Frame = +3 Query: 141 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 248 + T PE + CPE + PE + PE + P+ Sbjct: 98 EGNSTSPEGNSTCPEGNSTSPEGNSTSPEGNSTSPE 133 Score = 29.1 bits (62), Expect = 2.2 Identities = 11/36 (30%), Positives = 17/36 (47%) Frame = +3 Query: 141 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 248 + TCPE + PE + PE + PE + P+ Sbjct: 105 EGNSTCPEGNSTSPEGNSTSPEGNSTSPEGNSTSPE 140 Score = 28.7 bits (61), Expect = 2.8 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = +3 Query: 138 SQNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 248 ++ T PE + A PE + PE + A PE + P+ Sbjct: 69 TEGNSTSPEGNSASPEGNSTSPEGNSASPEGNSTSPE 105 Score = 28.7 bits (61), Expect = 2.8 Identities = 11/36 (30%), Positives = 17/36 (47%) Frame = +3 Query: 141 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 248 + PE + PE + A PE + PE + CP+ Sbjct: 77 EGNSASPEGNSTSPEGNSASPEGNSTSPEGNSTCPE 112 Score = 28.3 bits (60), Expect = 3.8 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +3 Query: 141 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 248 + T PE + A PE + PE + A PE + P+ Sbjct: 10 EGNSTSPEGNSASPEGNSTSPEGNSASPEGNSTSPE 45 Score = 28.3 bits (60), Expect = 3.8 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +3 Query: 141 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 248 + T PE + PE + A PE + A PE + P+ Sbjct: 126 EGNSTSPEGNSTSPEGNSASPEGNSASPEGNSASPE 161 Score = 28.3 bits (60), Expect = 3.8 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +3 Query: 141 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 248 + T PE + A PE + PE + A PE + P+ Sbjct: 196 EGNSTSPEGNSASPEGNSTSPEGNSASPEGNSTSPE 231 Score = 28.3 bits (60), Expect = 3.8 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +3 Query: 141 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 248 + T PE + A PE + PE + A PE + P+ Sbjct: 210 EGNSTSPEGNSASPEGNSTSPEGNSASPEGNSTSPE 245 Score = 27.1 bits (57), Expect = 8.7 Identities = 10/36 (27%), Positives = 16/36 (44%) Frame = +3 Query: 141 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 248 + PE + PE + CPE + PE + P+ Sbjct: 91 EGNSASPEGNSTSPEGNSTCPEGNSTSPEGNSTSPE 126 >SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) Length = 1536 Score = 30.7 bits (66), Expect = 0.71 Identities = 12/40 (30%), Positives = 20/40 (50%) Frame = +3 Query: 132 CVSQNTGTCPESSCACPEISCACPETSCACPESSCLCPQT 251 C++ N C + + C + + C S CP+ S LCP + Sbjct: 991 CLNDNV-MCLKDNVMCSKDAVTCQNRSVTCPKYSVLCPDS 1029 Score = 28.7 bits (61), Expect = 2.8 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = +3 Query: 132 CVSQNTGTCPESSCACPEISCACPETSCACPESS 233 C+ N C + + C S CP+ S CP+S+ Sbjct: 998 CLKDNV-MCSKDAVTCQNRSVTCPKYSVLCPDSN 1030 Score = 27.9 bits (59), Expect = 5.0 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = +3 Query: 138 SQNTGTCPESSCACPEISCACPETSCACPESS 233 S++ TC S CP+ S CP+++ E+S Sbjct: 1006 SKDAVTCQNRSVTCPKYSVLCPDSNVEPNETS 1037 >SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23) Length = 1250 Score = 29.9 bits (64), Expect = 1.2 Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 5/46 (10%) Frame = +3 Query: 129 TCVSQNTGTCPES-----SCACPEISCACPETSCACPESSCLCPQT 251 T V N GTC + SC C P SC P C C QT Sbjct: 40 TTVESNGGTCTYALNETKSCGSDNGGCTGPGASCDEPTGVCSCNQT 85 >SB_22833| Best HMM Match : ATP-synt_8 (HMM E-Value=5.9) Length = 117 Score = 29.9 bits (64), Expect = 1.2 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = +3 Query: 156 CPESSCACPEISCACPETSCACPESSCLCP 245 CP + ACP CP T CP + CP Sbjct: 4 CPLTLLACPLTLFTCPLTPFTCPLTPFTCP 33 Score = 29.5 bits (63), Expect = 1.6 Identities = 12/31 (38%), Positives = 13/31 (41%) Frame = +3 Query: 153 TCPESSCACPEISCACPETSCACPESSCLCP 245 TCP + CP CP T CP CP Sbjct: 24 TCPLTPFTCPLPPFTCPLTLLTCPLDMLSCP 54 Score = 28.7 bits (61), Expect = 2.8 Identities = 12/32 (37%), Positives = 13/32 (40%) Frame = +3 Query: 156 CPESSCACPEISCACPETSCACPESSCLCPQT 251 CP + CP CP T CP CP T Sbjct: 11 CPLTLFTCPLTPFTCPLTPFTCPLPPFTCPLT 42 Score = 28.3 bits (60), Expect = 3.8 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = +3 Query: 174 ACPEISCACPETSCACPESSCLCPQT 251 ACP ACP T CP + CP T Sbjct: 3 ACPLTLLACPLTLFTCPLTPFTCPLT 28 Score = 28.3 bits (60), Expect = 3.8 Identities = 11/31 (35%), Positives = 13/31 (41%) Frame = +3 Query: 153 TCPESSCACPEISCACPETSCACPESSCLCP 245 TCP + CP CP CP + CP Sbjct: 17 TCPLTPFTCPLTPFTCPLPPFTCPLTLLTCP 47 >SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 233 Score = 29.1 bits (62), Expect = 2.2 Identities = 11/28 (39%), Positives = 14/28 (50%) Frame = +3 Query: 132 CVSQNTGTCPESSCACPEISCACPETSC 215 CVS P + ACP ++ AC SC Sbjct: 80 CVSYRYDRVPYLTSACPNVTSACQRVSC 107 >SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) Length = 451 Score = 29.1 bits (62), Expect = 2.2 Identities = 9/34 (26%), Positives = 16/34 (47%) Frame = +3 Query: 153 TCPESSCACPEISCACPETSCACPESSCLCPQTC 254 +C + C+C + +C C+C + C C C Sbjct: 145 SCRVACCSCRVVCYSCRVACCSCRVACCSCRVVC 178 Score = 28.7 bits (61), Expect = 2.8 Identities = 9/34 (26%), Positives = 16/34 (47%) Frame = +3 Query: 153 TCPESSCACPEISCACPETSCACPESSCLCPQTC 254 +C + C+C + +C C+C + C C C Sbjct: 187 SCRVACCSCRVVCYSCRVVFCSCRVACCSCRVVC 220 Score = 28.3 bits (60), Expect = 3.8 Identities = 9/34 (26%), Positives = 16/34 (47%) Frame = +3 Query: 153 TCPESSCACPEISCACPETSCACPESSCLCPQTC 254 +C + C+C + +C C+C + C C C Sbjct: 124 SCRIACCSCRVVCYSCRVVFCSCRVACCSCRVVC 157 >SB_20444| Best HMM Match : F-box (HMM E-Value=5.2) Length = 332 Score = 29.1 bits (62), Expect = 2.2 Identities = 11/30 (36%), Positives = 12/30 (40%) Frame = +3 Query: 156 CPESSCACPEISCACPETSCACPESSCLCP 245 CP + P C CP P CLCP Sbjct: 60 CPSAFALLPLPYCLCPNAFALLPLPYCLCP 89 Score = 29.1 bits (62), Expect = 2.2 Identities = 11/30 (36%), Positives = 12/30 (40%) Frame = +3 Query: 156 CPESSCACPEISCACPETSCACPESSCLCP 245 CP + P C CP P CLCP Sbjct: 74 CPNAFALLPLPYCLCPSAFALLPLPYCLCP 103 >SB_51094| Best HMM Match : VWA (HMM E-Value=0) Length = 3544 Score = 24.6 bits (51), Expect(2) = 2.9 Identities = 8/14 (57%), Positives = 9/14 (64%) Frame = +3 Query: 141 QNTGTCPESSCACP 182 Q+ G C ES C CP Sbjct: 1524 QHGGVCTESGCMCP 1537 Score = 22.2 bits (45), Expect(2) = 2.9 Identities = 6/11 (54%), Positives = 8/11 (72%) Frame = +3 Query: 219 CPESSCLCPQT 251 C ES C+CP + Sbjct: 1529 CTESGCMCPSS 1539 >SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35) Length = 1686 Score = 24.6 bits (51), Expect(2) = 3.1 Identities = 8/14 (57%), Positives = 9/14 (64%) Frame = +3 Query: 141 QNTGTCPESSCACP 182 Q+ G C ES C CP Sbjct: 1266 QHGGVCTESGCMCP 1279 Score = 22.2 bits (45), Expect(2) = 3.1 Identities = 6/11 (54%), Positives = 8/11 (72%) Frame = +3 Query: 219 CPESSCLCPQT 251 C ES C+CP + Sbjct: 1271 CTESGCMCPSS 1281 >SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22) Length = 1421 Score = 28.3 bits (60), Expect = 3.8 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +3 Query: 132 CVSQNTGTCPESSCACPEISCACPETSCAC 221 C +TG P ++C C I P+T+C C Sbjct: 892 CCLMDTGL-PHTACQCCLIGTGLPQTACQC 920 Score = 27.9 bits (59), Expect = 5.0 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%) Frame = +3 Query: 132 CVSQNTGTCPESSCACPEISCACPETSCAC-------PESSCLC 242 C +TG P ++C C I P T+C C P ++C C Sbjct: 962 CRLMDTGL-PHTACQCRLIDTGLPHTACQCRLMDTGIPHTACQC 1004 Score = 27.9 bits (59), Expect = 5.0 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%) Frame = +3 Query: 132 CVSQNTGTCPESSCACPEISCACPETSCAC-------PESSCLC 242 C +TG P ++C C I P T+C C P ++C C Sbjct: 1004 CRLMDTGL-PHTACQCRLIDTGLPHTACQCRLMDTGLPHTACQC 1046 >SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2870 Score = 28.3 bits (60), Expect = 3.8 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%) Frame = +3 Query: 153 TCPESSCA--CPEISCACPETSCACPESSCLCPQTC 254 TC SC CP I C+ +C+ CP C Sbjct: 1672 TCSPDSCRPECPLICCSVCPPNCSAQSCGNFCPPKC 1707 Score = 27.9 bits (59), Expect = 5.0 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%) Frame = +3 Query: 162 ESSCACPEISCACPETSC---ACPESSCLCPQTC 254 E S +CP+I + SC C E S CPQ C Sbjct: 1282 EHSQSCPKICFTSCKPSCPVHCCSEHSNACPQEC 1315 >SB_25690| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 322 Score = 28.3 bits (60), Expect = 3.8 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 7/42 (16%) Frame = +3 Query: 150 GTCPES---SCACPEISCA----CPETSCACPESSCLCPQTC 254 G CP S SCA PE SCA CP C C ++C Sbjct: 103 GKCPPSPPPSCADPEDSCALDSDCPGDGQKCCAGGAGCGRSC 144 >SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17) Length = 1440 Score = 27.9 bits (59), Expect = 5.0 Identities = 11/31 (35%), Positives = 13/31 (41%) Frame = +3 Query: 156 CPESSCACPEISCACPETSCACPESSCLCPQ 248 C CA + CA P CA P C P+ Sbjct: 830 CTSVICAISHVICAIPCMMCAIPRVICAIPR 860 >SB_7889| Best HMM Match : VWC (HMM E-Value=2.6) Length = 203 Score = 27.9 bits (59), Expect = 5.0 Identities = 11/29 (37%), Positives = 13/29 (44%) Frame = +3 Query: 156 CPESSCACPEISCACPETSCACPESSCLC 242 CP+ CPE A PES+C C Sbjct: 31 CPQMMIKCPENQRVAYHEGPAVPESTCTC 59 >SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) Length = 351 Score = 27.5 bits (58), Expect = 6.6 Identities = 10/31 (32%), Positives = 12/31 (38%) Frame = +3 Query: 162 ESSCACPEISCACPETSCACPESSCLCPQTC 254 E +CAC CP+ C P C C Sbjct: 69 ERNCACRSAEFKCPDGKCVHPSKFCNGESDC 99 >SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) Length = 147 Score = 27.5 bits (58), Expect = 6.6 Identities = 10/31 (32%), Positives = 12/31 (38%) Frame = +3 Query: 162 ESSCACPEISCACPETSCACPESSCLCPQTC 254 E +CAC CP+ C P C C Sbjct: 69 ERNCACRSAEFKCPDGKCVHPSKFCNGESDC 99 >SB_58762| Best HMM Match : VWC (HMM E-Value=2.8e-06) Length = 218 Score = 27.1 bits (57), Expect = 8.7 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%) Frame = +3 Query: 153 TCPESSCACPEISCACP---ETSCACPESSCLCPQ 248 TC + C + C+CP S + PE C CP+ Sbjct: 172 TCSRGNGKCSFVGCSCPVGHHQSDSIPEGKC-CPE 205 >SB_44500| Best HMM Match : DUF1693 (HMM E-Value=4) Length = 553 Score = 27.1 bits (57), Expect = 8.7 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%) Frame = +3 Query: 159 PES-SCACPEISCACPETSCACPESSCLC 242 PES +C + C CPE + ESS C Sbjct: 478 PESQTCGSSRVPCTCPERTTRGTESSHCC 506 >SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 236 Score = 27.1 bits (57), Expect = 8.7 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = +3 Query: 132 CVSQNTGT--CPESSCACPEISCACPETSCACPESSC 236 C S +GT CP ++ + C + +C C +SC Sbjct: 173 CYSCESGTDVCPLATPCASQFGITCRKLTCFCSRTSC 209 >SB_197| Best HMM Match : LISCH7 (HMM E-Value=1.3) Length = 120 Score = 27.1 bits (57), Expect = 8.7 Identities = 10/29 (34%), Positives = 12/29 (41%) Frame = +3 Query: 156 CPESSCACPEISCACPETSCACPESSCLC 242 C + C C C C T C C + C C Sbjct: 30 CFAARCRCFATRCRCFATRCHCFAARCRC 58 >SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) Length = 1973 Score = 27.1 bits (57), Expect = 8.7 Identities = 9/26 (34%), Positives = 17/26 (65%) Frame = -2 Query: 211 LVSGQAQLISGQAQLLSGQVPVFWLT 134 ++ GQ Q++SG AQ + G + W++ Sbjct: 1945 IIDGQRQVVSGHAQKIRGAQALVWVS 1970 >SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17) Length = 1038 Score = 27.1 bits (57), Expect = 8.7 Identities = 11/35 (31%), Positives = 14/35 (40%) Frame = +3 Query: 144 NTGTCPESSCACPEISCACPETSCACPESSCLCPQ 248 N TC + C C C C E C E +C + Sbjct: 828 NICTCVPNICTCVPNICTCTEHMHICTEHMHMCTE 862 Score = 27.1 bits (57), Expect = 8.7 Identities = 14/38 (36%), Positives = 16/38 (42%) Frame = +3 Query: 129 TCVSQNTGTCPESSCACPEISCACPETSCACPESSCLC 242 TCV N TC + C C E C E C E +C Sbjct: 831 TCVP-NICTCVPNICTCTEHMHICTEHMHMCTEHMHMC 867 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,039,135 Number of Sequences: 59808 Number of extensions: 57351 Number of successful extensions: 531 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 253 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 489 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1087245449 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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