Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30226
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    31   0.36 
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    31   0.36 
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    31   0.36 
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      31   0.36 
Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical p...    31   0.47 
Z77666-9|CAJ43912.1|  541|Caenorhabditis elegans Hypothetical pr...    31   0.47 
Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical pr...    31   0.47 
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr...    31   0.47 
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    31   0.62 
Z81540-2|CAB04403.1|  190|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical ...    29   2.5  
U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AF100656-4|AAF99969.1|  159|Caenorhabditis elegans Hypothetical ...    27   7.6  
AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical ...    27   7.6  

>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
 Frame = +3

Query: 129 TCVSQNTGTCPESSCACPEISCACPETSCACP--ESSCLCPQTC 254
           TC     G   E SC C + SC+     C CP       C Q C
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCPLGTKGVSCDQKC 632


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
 Frame = +3

Query: 129 TCVSQNTGTCPESSCACPEISCACPETSCACP--ESSCLCPQTC 254
           TC     G   E SC C + SC+     C CP       C Q C
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCPLGTKGVSCDQKC 632


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
 Frame = +3

Query: 129 TCVSQNTGTCPESSCACPEISCACPETSCACP--ESSCLCPQTC 254
           TC     G   E SC C + SC+     C CP       C Q C
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCPLGTKGVSCDQKC 632


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
 Frame = +3

Query: 129 TCVSQNTGTCPESSCACPEISCACPETSCACP--ESSCLCPQTC 254
           TC     G   E SC C + SC+     C CP       C Q C
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCPLGTKGVSCDQKC 632


>Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical
           protein K08E7.5c protein.
          Length = 896

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +3

Query: 132 CVSQNTGTCPESSCACPEISCACPETSCAC-PESSCLCPQTC 254
           C +     C  +   CP I C CP+    C P   CL P TC
Sbjct: 645 CCAPPAPCCLPTIPCCPPIPC-CPQPKICCQPAPVCLPPPTC 685


>Z77666-9|CAJ43912.1|  541|Caenorhabditis elegans Hypothetical
           protein K08E7.5d protein.
          Length = 541

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +3

Query: 132 CVSQNTGTCPESSCACPEISCACPETSCAC-PESSCLCPQTC 254
           C +     C  +   CP I C CP+    C P   CL P TC
Sbjct: 290 CCAPPAPCCLPTIPCCPPIPC-CPQPKICCQPAPVCLPPPTC 330


>Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical
           protein K08E7.5b protein.
          Length = 493

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +3

Query: 132 CVSQNTGTCPESSCACPEISCACPETSCAC-PESSCLCPQTC 254
           C +     C  +   CP I C CP+    C P   CL P TC
Sbjct: 242 CCAPPAPCCLPTIPCCPPIPC-CPQPKICCQPAPVCLPPPTC 282


>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical protein
            K08E7.5a protein.
          Length = 1221

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +3

Query: 132  CVSQNTGTCPESSCACPEISCACPETSCAC-PESSCLCPQTC 254
            C +     C  +   CP I C CP+    C P   CL P TC
Sbjct: 970  CCAPPAPCCLPTIPCCPPIPC-CPQPKICCQPAPVCLPPPTC 1010


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 13/40 (32%), Positives = 15/40 (37%)
 Frame = +3

Query: 135 VSQNTGTCPESSCACPEISCACPETSCACPESSCLCPQTC 254
           V +  G C    C C    C C    C C    C C +TC
Sbjct: 70  VKRQGGGCGCCGCGCG--CCCCRPRCCCCCRRCCTCCRTC 107


>Z81540-2|CAB04403.1|  190|Caenorhabditis elegans Hypothetical
           protein F46B3.2 protein.
          Length = 190

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
 Frame = +3

Query: 102 SCSFCKLY*TCVSQNTGTCPE--SSCACPEISCACPETSCACPESSCL 239
           +C  CK      S     CP   S C   +    CP+T   CP + C+
Sbjct: 62  TCGLCKKDPNVCSDTCTVCPMDMSPCETDQYQKICPKTCNVCPPAICV 109


>AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8b protein.
          Length = 219

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 168 SCACPEISCACPETSCACPES 230
           +C   E SC+C    C+CPES
Sbjct: 99  ACDDSECSCSCSGGECSCPES 119


>AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8a protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 168 SCACPEISCACPETSCACPES 230
           +C   E SC+C    C+CPES
Sbjct: 225 ACDDSECSCSCSGGECSCPES 245


>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical
           protein T10E10.4 protein.
          Length = 966

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 171 CACPEISCACPETSCACPESSCLCPQT 251
           C+C ++S +CP TS  C    C C QT
Sbjct: 247 CSCSQVSSSCPGTS-QCQNKVC-CQQT 271


>AF100656-4|AAF99969.1|  159|Caenorhabditis elegans Hypothetical
           protein F49F1.5 protein.
          Length = 159

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +3

Query: 156 CPESSCACPE--ISCACPETSCACPESSCLC 242
           C ++S +CP+  I+C  P     CP S   C
Sbjct: 19  CMDTSLSCPDQVIACFEPSVQSECPYSCATC 49


>AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical
           protein C09D4.2 protein.
          Length = 254

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 135 VSQNTGTCPESSCACPEISCAC 200
           +S  TG+  E+ CAC   +CAC
Sbjct: 126 LSLRTGSSNENGCACVHGNCAC 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,720,304
Number of Sequences: 27780
Number of extensions: 45018
Number of successful extensions: 349
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)