Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30225
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q62097 Cluster: Mus musculus ORFs (putative primordial ...    33   6.7  
UniRef50_Q11PV1 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_Q1DRW4 Cluster: Predicted protein; n=2; Coccidioides im...    33   6.7  
UniRef50_Q03Y92 Cluster: Phosphoribosylaminoimidazolesuccinocarb...    33   8.9  
UniRef50_Q580Z2 Cluster: Putative uncharacterized protein; n=1; ...    33   8.9  
UniRef50_A0DVA2 Cluster: Chromosome undetermined scaffold_65, wh...    33   8.9  

>UniRef50_Q62097 Cluster: Mus musculus ORFs (putative primordial
           protein), complete cds; n=6; Eukaryota|Rep: Mus musculus
           ORFs (putative primordial protein), complete cds - Mus
           musculus (Mouse)
          Length = 250

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 18/63 (28%), Positives = 35/63 (55%)
 Frame = +1

Query: 178 NVLTMVLHVTSMCCGIKLRTICFVIAICIWCLVSWI*RFIC*QLLLSLMASSVTLITISS 357
           ++++  L + S+C  I L  +C  I + I CL  ++  ++C  + LS+  S V L +I  
Sbjct: 110 SIMSDCLSIMSVCLSICLSYVCLSIYLSIICLSVYLSIYLC--IYLSIYLSYVCLSSICL 167

Query: 358 ALY 366
           ++Y
Sbjct: 168 SIY 170


>UniRef50_Q11PV1 Cluster: Putative uncharacterized protein; n=1;
           Cytophaga hutchinsonii ATCC 33406|Rep: Putative
           uncharacterized protein - Cytophaga hutchinsonii (strain
           ATCC 33406 / NCIMB 9469)
          Length = 133

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -1

Query: 82  TSQIIYFRKFLTGSLRCSTPPH 17
           TSQI Y  + LTGS+ C+ PPH
Sbjct: 97  TSQISYASEILTGSVTCNAPPH 118


>UniRef50_Q1DRW4 Cluster: Predicted protein; n=2; Coccidioides
           immitis|Rep: Predicted protein - Coccidioides immitis
          Length = 218

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +3

Query: 219 WNQITHYMFRHRYLHLVSCVLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPWAVVEPLLLV 398
           W  ITH  F+  +       LD+  H + +  + D      N D+  AI W+ VE L  +
Sbjct: 87  WQHITHANFKANFHDAQKITLDVKQHCIDMQKIKDRLVATWNIDRIDAI-WSKVESLERI 145

Query: 399 LNLGTH 416
             +  H
Sbjct: 146 AAMLVH 151


>UniRef50_Q03Y92 Cluster:
           Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR)
           synthase; n=4; Lactobacillales|Rep:
           Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR)
           synthase - Leuconostoc mesenteroides subsp.
           mesenteroides (strain ATCC 8293 /NCDO 523)
          Length = 249

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 210 HVLWNQITHYMFRHRYLHLVSCV--LDIAFHLLTVAIVTDGFQCDVNYDKFSAIPWAVVE 383
           H+L+  +T     + YL  VS    LD+A  +L + +VT  +       KF+A P   + 
Sbjct: 66  HILFEHLTRQGIENHYLSSVSETDELDLALDILPIEVVTRNYASGHFVSKFNATPMQKLT 125

Query: 384 PLL 392
           P++
Sbjct: 126 PVV 128


>UniRef50_Q580Z2 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 364

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +1

Query: 214 CCGIKLRTICFVI-AICIWCLVSWI 285
           CCG K   ICFV+ AIC+ CLV ++
Sbjct: 4   CCGGKRLQICFVVQAICMVCLVGFV 28


>UniRef50_A0DVA2 Cluster: Chromosome undetermined scaffold_65, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_65,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 708

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = -3

Query: 326 AISDNSNCQQMKRYIQDTRHQMQIAMTKHIVRNLIPQHMLV 204
           A+   S  QQ+K YIQD  + ++I   KH++RN I Q +L+
Sbjct: 212 ALEMESTVQQIKVYIQDILN-LKIQFWKHLLRNQINQDILI 251


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 783,470,487
Number of Sequences: 1657284
Number of extensions: 17203383
Number of successful extensions: 41025
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 39453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40997
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)