Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30225
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    24   1.0  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    23   1.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   1.8  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.3  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 592 CSQIGHDNPQPNQINEKI-EDVNQVYVENPG*HLG 491
           C Q+  DNP   +I EK+ +D+ ++  E    HLG
Sbjct: 366 CGQLNPDNPNVYEILEKLYKDLLELSDETELFHLG 400


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +2

Query: 485 RRAQMLSRILHVYLVDI----LNFLINLIWLRIVVSYLG 589
           R+++M   I H+ L D+    +N L ++IW   V  Y G
Sbjct: 55  RKSRMNYFITHLALADLSVGLINVLTDIIWKTTVAWYAG 93


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 498 CYPGFSTYTWLTSSIFS 548
           C+ GFS+ TW   S +S
Sbjct: 138 CHQGFSSSTWCNYSAYS 154


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 402 LEPGVKAPQPPRV 364
           L+PG K+P  PR+
Sbjct: 60  LDPGRKSPSSPRI 72


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,884
Number of Sequences: 336
Number of extensions: 4885
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)