Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30225
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    29   0.85 
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    28   1.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.0  

>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 267 VSCVLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPWAVVEPLLLV 398
           V+C     F    + +   GF    +  KF A+ WAV E +LLV
Sbjct: 145 VNCQSTTKFIFGELPVFNSGFSVSSSDVKFRAVQWAVGEAILLV 188



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 527 VDILNFLINLIWLRIVVS 580
           V +L+F++N+IWL I VS
Sbjct: 210 VILLDFVLNMIWLPIAVS 227


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 110 IQSTIKLLLWVCVVNCVQFFQLETFSQWFYTSLACAVESNYALYVSSSLSAFGV-LCLG 283
           I S +   L++ +V C Q +     + W YT  A        +++SS  +A    LCLG
Sbjct: 150 IPSLVISFLYITLVYCPQAYWTWAPNGWLYTLGALDFAGGGPVHISSGFAALAYSLCLG 208


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 167  FQLETFSQWFYTSLACAVESNYALYVSSSLSAFGVLCLGYSVSSADSCYCH*WL 328
            F L   + +F  + AC+V  + A YV +  S+ G L   ++  +      H W+
Sbjct: 2008 FILVAITHFFQKTTACSVIQHIAAYVYAISSSTGSLYFAWNFGAEGGIATHHWI 2061


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,263,939
Number of Sequences: 5004
Number of extensions: 72711
Number of successful extensions: 183
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)