Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30225
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    34   0.094
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851...    30   1.5  
06_01_0076 - 622789-623689,623714-623931                               30   1.5  
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508...    30   2.0  
12_02_0580 + 20776820-20777247,20777341-20778109,20779280-207794...    29   2.7  
04_04_0340 + 24517562-24520318                                         29   2.7  
06_01_0451 + 3194919-3195416,3195560-3195580,3196282-3196467,319...    28   8.2  

>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
 Frame = -3

Query: 545 EN*GCQP-GIRG-ESGIASGLCDNRCVLNIHIVLTPKCPREWVEAVGS-EV*NQE*RLHN 375
           EN G +P G RG +  +  G        NI+     KC R   EA    +  N      +
Sbjct: 226 ENQGSKPDGARGPKPKMPEGSWKCEKCNNINYPFRTKCNRPSCEAEKPFQTNNANESSAD 285

Query: 374 RPGYSAELIVINVTLEAISDNSNCQQMKRYIQDTRHQMQIAMTKHIVRNLIPQHMLVTC 198
           +      LI ++V L   +D+  C  + + + D +H++  ++   +  +L P H+ V C
Sbjct: 286 QDNQVRTLIHVDVLLSGAADSIACSDLAKEVGDGKHRVMASLDVRMQISLTPYHICVEC 344


>09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,
            8511209-8511523,8511576-8511682,8512559-8512629,
            8512952-8513029,8513390-8513454,8514224-8514274,
            8514373-8514414,8514785-8515105,8515154-8517880
          Length = 1480

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +2

Query: 104  LYIQSTIKLLLWVCVVNCVQ-FFQLETFSQWFYTSLACAVESNYALYVS-SSLSAFGVLC 277
            L  QS  +  L  CV N ++ FFQ+   SQW+Y    C + S +  Y+    +S+   + 
Sbjct: 1031 LSFQSKWRTYLRSCVRNNLRTFFQVLVQSQWWYNLEGCLLHSPHLKYLRILDVSSSDQIK 1090

Query: 278  LGYSV 292
            LG SV
Sbjct: 1091 LGKSV 1095


>06_01_0076 - 622789-623689,623714-623931
          Length = 372

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +3

Query: 366 PWAVVEP---LLLVLNLGTHGFYPFPGTFR 446
           PW V+     L+L L++G H  Y FPGTF+
Sbjct: 233 PWLVISGDMLLMLDLSVGIHHSYGFPGTFQ 262


>04_03_0496 +
           16549333-16549465,16549620-16550020,16550412-16550880,
           16552038-16552076,16553151-16553272,16553531-16553677,
           16554097-16554186,16554274-16554398,16554567-16554772,
           16554951-16555075,16555528-16555722,16556295-16556337,
           16556762-16557267,16558198-16558570,16559772-16560062,
           16560132-16561101,16561196-16561892,16562378-16562658,
           16562731-16563400,16563860-16564034,16565103-16565659
          Length = 2204

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 240 MFRHRYLHLVSCVLDIAFHLLTVAIVTD 323
           M R +Y H V C  + AFH L  A +TD
Sbjct: 413 MLRGQYAHSVGCFDEAAFHFLEAARLTD 440


>12_02_0580 +
           20776820-20777247,20777341-20778109,20779280-20779447,
           20779877-20780236
          Length = 574

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 197 RTIVRTFPIERTARNSPHTPTIIVLLLIVYT 105
           R  VR  P E T ++ PH PT+  L L V T
Sbjct: 394 RLTVRVLPAEDTVKDIPHLPTVTKLRLDVNT 424


>04_04_0340 + 24517562-24520318
          Length = 918

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -2

Query: 681 VSEIK*FASRPFTMERLRNIRIGSGFLLYNAPK*DTTILNQIRLMRKLR-MSTRYTWRIR 505
           VS+    +  P  + +L  + +  GF+L NA   D   LN++ +++KLR +S R  + I 
Sbjct: 705 VSDCYLLSGMPKGLGKLFQLEVLKGFVLSNAKSKDLCHLNELVMLKKLRKLSIRIGYSID 764

Query: 504 DSIWALR*SMC 472
              +A    +C
Sbjct: 765 SGQFANFGELC 775


>06_01_0451 +
           3194919-3195416,3195560-3195580,3196282-3196467,
           3197272-3197556
          Length = 329

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 217 CGIKLRTICFVIAICIWCLVSW 282
           C I L  +CFV+   ++CL+ W
Sbjct: 132 CQIVLGFLCFVLLFTVFCLIIW 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,882,562
Number of Sequences: 37544
Number of extensions: 466315
Number of successful extensions: 1037
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)