Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30225
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44547| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-11) 30 2.1
SB_31254| Best HMM Match : rve (HMM E-Value=5.2e-15) 29 2.7
SB_11559| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-33) 29 2.7
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 29 3.6
SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_57991| Best HMM Match : rve (HMM E-Value=1.1e-10) 29 4.8
SB_45156| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_30008| Best HMM Match : DUF1030 (HMM E-Value=7.2) 29 4.8
SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_15838| Best HMM Match : Peptidase_A17 (HMM E-Value=7.9e-32) 28 6.3
SB_13977| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_19720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
>SB_44547| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-11)
Length = 332
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +3
Query: 249 HRYLHLVSCVLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPW 371
H + + C L IA L+TVAI T C +NY FS W
Sbjct: 67 HTSPNWIICSLAIADLLVTVAIGTTEMLCTLNYCTFSCNWW 107
>SB_31254| Best HMM Match : rve (HMM E-Value=5.2e-15)
Length = 341
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -3
Query: 383 LHNRP----GYSAELIVINVTLEAISDNSNCQQMKRYIQDTRHQMQIAMTKHIVRNL 225
++NRP G + ++ LE +SD N + R+IQ ++ ++ T+ VR+L
Sbjct: 207 MNNRPLVYQGGGRPVPILEEDLEKLSDAGNVTRRMRFIQRSKEDLKKRFTREYVRSL 263
>SB_11559| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-33)
Length = 1485
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -3
Query: 383 LHNRP----GYSAELIVINVTLEAISDNSNCQQMKRYIQDTRHQMQIAMTKHIVRNL 225
++NRP G + ++ LE +SD N + R+IQ ++ ++ T+ VR+L
Sbjct: 1344 MNNRPLVYQGGGRPVPILEEDLEKLSDAGNVTRRMRFIQRSKEDLKKRFTREYVRSL 1400
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 380 HNRPGYSAELIVINVTLEAISDNSNCQQMKRYIQDTRHQ 264
H++ G + EL+ + T++ + + KR I D +HQ
Sbjct: 506 HDKEGVNGELVTNSRTIQELESKLEASESKRQILDEQHQ 544
>SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = -2
Query: 192 HCENVSN*KNCTQFTTHTHNNSFIVDCIYKSKHTKI*LAKLFIFVNF*QEVCVVRHHHTR 13
HCE NCT+ T ++H+ + T I + + F+ ++ HH R
Sbjct: 660 HCEKCLFPSNCTRPTDNSHSGTLAAKHYKLRDTTIIVVCAILAFICIIAIAALIYRHHKR 719
Query: 12 NRF 4
+F
Sbjct: 720 QKF 722
>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1984
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/78 (24%), Positives = 36/78 (46%)
Frame = +3
Query: 300 LTVAIVTDGFQCDVNYDKFSAIPWAVVEPLLLVLNLGTHGFYPFPGTFRRQYNMYVEYTS 479
LT+ F + + + S+ VV LLL++ L + + ++ +YN+Y+ +
Sbjct: 1757 LTIREAVQSFNDRIVFARNSSHACVVVLMLLLMVTLASVLVNAYVYLYKNRYNLYIWHAL 1816
Query: 480 IIAEPRCYPGFSTYTWLT 533
+ YP ST W+T
Sbjct: 1817 MPLALAIYP-MSTAAWVT 1833
>SB_57991| Best HMM Match : rve (HMM E-Value=1.1e-10)
Length = 314
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 347 VINVTLEAISDNSNCQQMKRYIQDTRHQMQIAMTKHIVRNL 225
++ LE +SD N + R+IQ ++ ++ T+ VR+L
Sbjct: 196 ILEEDLEKLSDAGNVTRRMRFIQHSKEDLKKRFTREYVRSL 236
>SB_45156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 347 VINVTLEAISDNSNCQQMKRYIQDTRHQMQIAMTKHIVRNL 225
++ LE +SD N + R+IQ ++ ++ T+ VR+L
Sbjct: 237 ILEEDLEKLSDAGNVTRRMRFIQHSKEDLKKRFTREYVRSL 277
>SB_30008| Best HMM Match : DUF1030 (HMM E-Value=7.2)
Length = 155
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/67 (20%), Positives = 34/67 (50%)
Frame = +1
Query: 82 LNFCVLRFVYTINNKTIIVGVCGELRAVLSIGNVLTMVLHVTSMCCGIKLRTICFVIAIC 261
+N C++ + IN +++G+ + ++I V+ MV+ V + + + V+ I
Sbjct: 8 INICIIIVIVIINRGIMVIGISDFVYICITIVIVIIMVMTVIVIDINVIVIIYIMVVVIS 67
Query: 262 IWCLVSW 282
+ +VS+
Sbjct: 68 LGFIVSF 74
>SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 347 VINVTLEAISDNSNCQQMKRYIQDTRHQMQIAMTKHIVRNL 225
++ LE +SD N + R+IQ ++ ++ T+ VR+L
Sbjct: 248 ILEEDLEKLSDAGNVTRRMRFIQRSKEDLKKRFTREYVRSL 288
>SB_15838| Best HMM Match : Peptidase_A17 (HMM E-Value=7.9e-32)
Length = 1027
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 347 VINVTLEAISDNSNCQQMKRYIQDTRHQMQIAMTKHIVRNL 225
++ LE +SD N + R+IQ ++ ++ T+ VR+L
Sbjct: 831 ILEEDLEKLSDAGNVTRRMRFIQRSKEDLKKRFTREYVRSL 871
>SB_13977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 763
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 347 VINVTLEAISDNSNCQQMKRYIQDTRHQMQIAMTKHIVRNL 225
++ LE +SD N + R+IQ ++ ++ T+ VR+L
Sbjct: 603 ILEEDLEKLSDAGNVTRRMRFIQRSKEDLKKRFTREYVRSL 643
>SB_19720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 281 QDTRHQMQIAMTKHIVRNLIPQHMLVTCRTI 189
QDTR Q + + +H++R+L +TC +
Sbjct: 263 QDTRQQQFLRLLRHLMRHLAQVERSITCEVL 293
>SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1358
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 347 VINVTLEAISDNSNCQQMKRYIQDTRHQMQIAMTKHIVRNL 225
++ LE +SD N + R+IQ ++ ++ T+ VR+L
Sbjct: 1198 ILEEDLEKLSDAGNVTRRMRFIQRSKEDLKKRFTREYVRSL 1238
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,824,398
Number of Sequences: 59808
Number of extensions: 570188
Number of successful extensions: 1212
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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