Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30225
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117207-5|CAB60395.1|  375|Caenorhabditis elegans Hypothetical ...    30   1.8  
U97017-7|AAB52357.1|  130|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U97017-6|AAB52362.1|  374|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AC024791-38|AAY55888.1|  246|Caenorhabditis elegans Hypothetical...    28   5.6  
L41807-1|AAA67369.1|  402|Caenorhabditis elegans fatty acid desa...    28   7.4  
AL132951-8|CAC44309.1|  402|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF000264-8|AAK70649.2|  165|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AL117207-5|CAB60395.1|  375|Caenorhabditis elegans Hypothetical
           protein Y60A3A.7 protein.
          Length = 375

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 334 VTLITISSALYPGRLWSLYSWF*TSEP 414
           +TLI IS  ++P  LW LYSW+ T  P
Sbjct: 3   ITLILISIIIFPILLW-LYSWYITDIP 28


>U97017-7|AAB52357.1|  130|Caenorhabditis elegans Hypothetical
           protein F47B3.2 protein.
          Length = 130

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = -3

Query: 368 GYSAELIVINVTLEAISDNSNCQQMKRYIQDTRHQMQIAM 249
           G S  ++ I++ ++ +    NC+ MK+ +++ R+Q   A+
Sbjct: 26  GRSGTIVGISLIMDKMIQGINCKDMKKLVEEIRNQRHYAI 65


>U97017-6|AAB52362.1|  374|Caenorhabditis elegans Hypothetical
           protein F47B3.7 protein.
          Length = 374

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = -3

Query: 368 GYSAELIVINVTLEAISDNSNCQQMKRYIQDTRHQMQIAM 249
           G S  ++ I++ ++ +    NC+ MK+ +++ R+Q   A+
Sbjct: 270 GRSGTIVGISLIMDKMIQGINCKDMKKLVEEIRNQRHYAI 309


>AC024791-38|AAY55888.1|  246|Caenorhabditis elegans Hypothetical
           protein Y47G6A.32 protein.
          Length = 246

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +1

Query: 151 ELRAVLSIGNVLTMVLHVTSMCCGIKLRTICFVIAICIWC 270
           E+RA L+   VL + + V ++C G+ + T+C  +A C +C
Sbjct: 183 EIRAALTPFWVLAVAIGVAAICVGLNV-TLC--VAYCCYC 219


>L41807-1|AAA67369.1|  402|Caenorhabditis elegans fatty acid
           desaturase protein.
          Length = 402

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 195 STRH*HVLWNQITHYMFRH-RYLHLVSCVLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPW 371
           +T H H+    + H+ F    + HL+     +   L  ++    G++  VNYD F+   W
Sbjct: 315 TTMH-HITDGHVAHHFFNKIPHYHLIEATEGVKKVLEPLSDTQYGYKSQVNYDFFARFLW 373


>AL132951-8|CAC44309.1|  402|Caenorhabditis elegans Hypothetical
           protein Y67H2A.8 protein.
          Length = 402

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 195 STRH*HVLWNQITHYMFRH-RYLHLVSCVLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPW 371
           +T H H+    + H+ F    + HL+     +   L  ++    G++  VNYD F+   W
Sbjct: 315 TTMH-HITDGHVAHHFFNKIPHYHLIEATEGVKKVLEPLSDTQYGYKSQVNYDFFARFLW 373


>AF000264-8|AAK70649.2|  165|Caenorhabditis elegans Hypothetical
           protein F43E2.11 protein.
          Length = 165

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 378 VEPLLLVLNLGTHGFYPFPGTFRRQYNMYVEYTSII 485
           V P+ +V  L   G+ PFP T  R+Y  + E  +I+
Sbjct: 83  VHPITVVRELIQFGYEPFPTTCGRKYIFFGEEMAIL 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,270,112
Number of Sequences: 27780
Number of extensions: 422815
Number of successful extensions: 1170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)