Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30225
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.6  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   3.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   6.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 498 CYPGFSTYTWLTSS 539
           C PG+  Y W T+S
Sbjct: 542 CIPGYMIYIWFTTS 555


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 498 CYPGFSTYTWLTSS 539
           C PG+  Y W T+S
Sbjct: 595 CIPGYMIYIWFTTS 608


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 314 NSNCQQMKRYIQDTRHQMQIAMTKHIVRNLIPQHMLV 204
           NSN  Q+K++++DT +++   + +     LI +   V
Sbjct: 168 NSNIFQLKQHMRDTMNKIAETLDEDTKNKLIEESKTV 204


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 239 IVRNLIPQHMLVTC-RTIVRTFPIERTARNSPHTPTIIVLLLIVY 108
           I+RN++P++++  C +    T+  +  A  +    T I    +VY
Sbjct: 190 IIRNMVPENLVQACFQQAQTTYVTKEVATGTASEITQIQEATLVY 234


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 109 YTINNKTIIVGVCGELRAVLSIGNVLTMV 195
           YT+    +I  V G +     IGN+L  V
Sbjct: 36  YTVTQAILIALVLGSIIVGTVIGNILVCV 64


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 302 QQMKRYIQDTRHQMQIAMTKHIVRNLIPQ 216
           +Q ++     +HQ Q   T+H++    PQ
Sbjct: 413 EQQQQMQAQQQHQQQQQQTQHVINAQQPQ 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,229
Number of Sequences: 438
Number of extensions: 5831
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)