Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30224
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    27   3.5  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    26   4.7  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    26   6.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.1  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   8.1  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   8.1  

>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 142 VTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYP 237
           V +++ +G P  H ++V  P YV   +P   P
Sbjct: 236 VEIIRVLGTPSYHEISVMNPNYVNHSLPNVRP 267


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -2

Query: 171 RNSDLLHHGHMVRLRVFCVRVASGSHSSEGR 79
           RN  L  HG       FC +  S SH  +GR
Sbjct: 32  RNCTLQRHGSRASADEFCEQYRSRSHGPQGR 62


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 213 LHVLRDRHSHRMGNRNSDLLHHGHMVRLRVFCVRVASGSHSSEGRALAS 67
           L ++   HS      N +LL  G +VRLR   V      HS E + + S
Sbjct: 358 LWIIEHEHSQDNNRSNIELLKDGSVVRLR--HVMTGRALHSHEHKPIVS 404


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 169 PIPHPVAVSVPQYVKVPIPQPYPVHV 246
           P P P AV VP     PIP P P  +
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPI 757


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 106 SHTHTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVP 219
           S + T+H +P + T  ++       P AV+ PQ V+ P
Sbjct: 313 STSETKHIRPNNSTPYQRRAETSTKPKAVATPQKVEAP 350


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 563 TPN**PQVVIRRYAYQIFIQTFKIYL 486
           TPN  P V+I +Y+ +  IQ   +YL
Sbjct: 478 TPNLPPMVIIEQYSAKFLIQQALLYL 503


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,288
Number of Sequences: 5004
Number of extensions: 60474
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)