Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30224
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1673 - 28532923-28533009,28533058-28533117,28533664-285337...    31   1.2  
02_03_0005 + 13865016-13865025,13865247-13865374,13865467-138659...    29   2.8  
05_06_0248 + 26673107-26674351                                         29   4.8  
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842...    28   6.4  
07_03_0698 - 20765305-20768526                                         28   6.4  
01_06_1623 - 38716606-38717424                                         28   6.4  
11_04_0024 - 12376642-12377362,12377614-12377849                       28   8.5  
03_06_0702 + 35626836-35627712,35627820-35627992,35629318-35629584     28   8.5  

>07_03_1673 -
           28532923-28533009,28533058-28533117,28533664-28533732,
           28534757-28534862,28535058-28535203,28535805-28536017,
           28536523-28536546,28536647-28536704,28536739-28537022,
           28538890-28539063,28539427-28539825
          Length = 539

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 124 VLCACGFGLPFFRRPSAGERY*EKDDCCFKSD 29
           V CAC FG+ F    +   R+  K+D CFK +
Sbjct: 361 VTCACAFGIWFLDGGTYMPRHLHKEDICFKME 392


>02_03_0005 +
           13865016-13865025,13865247-13865374,13865467-13865994,
           13866111-13866287
          Length = 280

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 160 IGVPIPHPVAVSVPQYVKVPIPQ-PYPVHVTVDNLSMYLFIRLST 291
           IG P+P+P +V VP  V VPIP    P+H     L  Y + R  T
Sbjct: 91  IGPPLPYPFSVPVP--VPVPIPSGAVPMH---PQLQAYPYFRNQT 130


>05_06_0248 + 26673107-26674351
          Length = 414

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 177 GNRNSDLLHHGHMVRLRVFCVRVASGSHSS 88
           GN N +LLHHG+    R      A+GS +S
Sbjct: 363 GNGNGNLLHHGYYTGSRNATATAATGSSNS 392


>08_02_1171 +
           24880363-24881355,24882553-24882702,24883505-24884210,
           24885012-24885404,24885759-24885805,24886088-24886111
          Length = 770

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +3

Query: 84  LLKNGSPKPHAHRTHEAVPCDRGEEDRSSDSPSGGCVGPAVREGAHTSTLPGPR 245
           LL++ SP PH    H A   +R   D +     GG V   VR  A +S  P PR
Sbjct: 131 LLRHQSPHPH---PHPAADPERDAVDAAGGGGGGGAV-DRVRVEAPSSQKPWPR 180


>07_03_0698 - 20765305-20768526
          Length = 1073

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 401  LRDGHLYFFFDLNGIRLFDFIGHWFFD-RVRYWFFNNLVDNLI 276
            L  G L     L+GIR      H F +  +R+W F NL+D +I
Sbjct: 950  LNQGALDVLSRLDGIRYLRLCYHSFAEGALRFWSFGNLMDLII 992


>01_06_1623 - 38716606-38717424
          Length = 272

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +1

Query: 130 KPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYPVHVTVDNLSMYLFIRLSTKLL 300
           +PY V V++ IG PIP   A +VP  + +P+P         ++ ++YL    S ++L
Sbjct: 11  RPYFVDVLQSIGHPIP---ATAVPD-ITLPVPPGERRTTRPESETVYLNFTPSPEML 63


>11_04_0024 - 12376642-12377362,12377614-12377849
          Length = 318

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 31  RF*NNSRPSLSSARQRSAF*RMGARSHTHTEHTKPYHVTVVKKIGVPI 174
           R  N++  +L S R+R A+  +  R + HT    P +     K   PI
Sbjct: 40  RLLNDTELNLVSDRERQAYYMLSDREYAHTREYSPENAHTKYKFSAPI 87


>03_06_0702 + 35626836-35627712,35627820-35627992,35629318-35629584
          Length = 438

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 121 EHTKPYH-VTVVKKIGVPIPHPVAVSVPQYVKVPIPQP 231
           E T P+  V V +      P+PVAV+V +    P+PQP
Sbjct: 72  ESTTPHSPVAVDEPESSTAPNPVAVAVAEPKPAPVPQP 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,682,958
Number of Sequences: 37544
Number of extensions: 420917
Number of successful extensions: 1558
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1535
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)