Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30224
(715 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.075
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 33 0.17
SB_24584| Best HMM Match : bZIP_1 (HMM E-Value=0.0086) 33 0.30
SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74) 31 0.70
SB_58746| Best HMM Match : RA (HMM E-Value=0.85) 31 0.93
SB_5940| Best HMM Match : Antimicrobial_3 (HMM E-Value=2.4) 31 1.2
SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41) 30 2.1
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2) 29 2.8
SB_34680| Best HMM Match : WD40 (HMM E-Value=4.5e-07) 29 4.9
SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_33357| Best HMM Match : Neur_chan_memb (HMM E-Value=8.3e-10) 28 6.5
SB_2633| Best HMM Match : Drf_FH1 (HMM E-Value=4) 28 6.5
SB_1589| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_51795| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_13194| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_11938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 34.7 bits (76), Expect = 0.075
Identities = 20/36 (55%), Positives = 22/36 (61%)
Frame = +1
Query: 133 PYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYPV 240
P+H T + VP P PV S PQ KVPIP PYPV
Sbjct: 447 PFH-TPPRVEHVPFPIPVH-SPPQIEKVPIPFPYPV 480
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 160 IGVPIPHPVAVSVPQYVKVPIPQPYPV 240
+ VP+P PV V VP + + P+P P P+
Sbjct: 1092 VPVPVPVPVRVPVPMHQQSPLPMPRPI 1118
>SB_24584| Best HMM Match : bZIP_1 (HMM E-Value=0.0086)
Length = 404
Score = 32.7 bits (71), Expect = 0.30
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Frame = -3
Query: 476 ESAHLVFTSLMVVDVFVHGY----MDGIGLRDGHLYFFFDLNGIRLFDFIGHWFFD--RV 315
+S + VF L V + GY + G+ + +G Y F L G+R+ + G+W F+ RV
Sbjct: 275 DSGYWVFGLLSVRVIEGSGYWVFGLLGVRVIEGSGYLMFGLLGVRVIEGSGYWVFELLRV 334
Query: 314 RYWFFNNLVDNLINRY 267
R+++ + I Y
Sbjct: 335 RHYYATTWSRSAIGDY 350
>SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)
Length = 483
Score = 31.5 bits (68), Expect = 0.70
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +1
Query: 115 HTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYPVHVTVDNLSMYLFIRLSTK 294
H H P+ V V + VP PV V VP V+VP+P PV+ T ++ ++R +K
Sbjct: 208 HHHHHHPFPVRV--PVRVPFRVPVRVPVP--VRVPVPIHSPVYPT-ESAGRGYWLRRKSK 262
Query: 295 LLKN 306
+ K+
Sbjct: 263 IGKS 266
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 109 HTHTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQP-YP 237
H H H P V V VP+ PV V VP VPI P YP
Sbjct: 208 HHHHHHPFPVRVPVRVPFRVPVRVPVPVRVP----VPIHSPVYP 247
>SB_58746| Best HMM Match : RA (HMM E-Value=0.85)
Length = 820
Score = 31.1 bits (67), Expect = 0.93
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 443 VVDVFVHGYMD--GIGLRDGHLYFFFDLNGIRLFDFIGHWFFDRVRYWFFN 297
V D+F + D G + D Y FDL G +FD G+ FD Y F+
Sbjct: 341 VFDMFGYSVFDMFGYSVFDMFCYSVFDLFGYSVFDMFGYSVFDMFGYSVFD 391
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 443 VVDVFVHGYMD--GIGLRDGHLYFFFDLNGIRLFDFIGHWFFDRVRYWFFN 297
V D+F + D G + D Y FDL G +FD G+ FD Y F+
Sbjct: 309 VFDMFGYSVFDLFGYSVFDMFGYSVFDLFGYSVFDMFGYSVFDMFGYSVFD 359
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 443 VVDVFVHGYMD--GIGLRDGHLYFFFDLNGIRLFDFIGHWFFDRVRYWFFN 297
V D+F + D G + D Y FDL G +FD G+ FD Y F+
Sbjct: 389 VFDMFGYSVFDMFGYSVFDMFGYSVFDLFGYSVFDMFGYSVFDMFGYSVFD 439
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 443 VVDVFVHGYMD--GIGLRDGHLYFFFDLNGIRLFDFIGHWFFDRVRYWFFN 297
V D+F + D G + D Y FDL G +FD G+ FD Y F+
Sbjct: 293 VFDMFGYSVFDMFGYSVFDMFGYSVFDLFGYSVFDMFGYSVFDLFGYSVFD 343
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 443 VVDVFVHGYMD--GIGLRDGHLYFFFDLNGIRLFDFIGHWFFDRVRYWFFN 297
V D+F + D G + D Y FD+ G +FD G+ FD Y F+
Sbjct: 365 VFDLFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFD 415
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 443 VVDVFVHGYMD--GIGLRDGHLYFFFDLNGIRLFDFIGHWFFDRVRYWFFN 297
V D+F + D G + D Y FD+ G +FD G+ FD Y F+
Sbjct: 413 VFDLFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFD 463
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 443 VVDVFVHGYMD--GIGLRDGHLYFFFDLNGIRLFDFIGHWFFDRVRYWFFN 297
V D+F + D G + D Y FD+ G +FD G+ FD Y F+
Sbjct: 421 VFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFD 471
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 443 VVDVFVHGYMD--GIGLRDGHLYFFFDLNGIRLFDFIGHWFFDRVRYWFFN 297
V D+F + D G + D Y FD+ G +FD G+ FD Y F+
Sbjct: 429 VFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFD 479
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 443 VVDVFVHGYMD--GIGLRDGHLYFFFDLNGIRLFDFIGHWFFDRVRYWFFN 297
V D+F + D G + D Y FD+ G +FD G+ FD Y F+
Sbjct: 437 VFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFD 487
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 443 VVDVFVHGYMD--GIGLRDGHLYFFFDLNGIRLFDFIGHWFFDRVRYWFFN 297
V D+F + D G + D Y FD+ G +FD G+ FD Y F+
Sbjct: 445 VFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFD 495
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 443 VVDVFVHGYMD--GIGLRDGHLYFFFDLNGIRLFDFIGHWFFDRVRYWFFN 297
V D+F + D G + D Y FD+ G +FD G+ FD Y F+
Sbjct: 453 VFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFD 503
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 443 VVDVFVHGYMD--GIGLRDGHLYFFFDLNGIRLFDFIGHWFFDRVRYWFFN 297
V D+F + D G + D Y FD+ G +FD G+ FD Y F+
Sbjct: 461 VFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFD 511
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 443 VVDVFVHGYMD--GIGLRDGHLYFFFDLNGIRLFDFIGHWFFDRVRYWFFN 297
V D+F + D G + D Y FD+ G +FD G+ FD Y F+
Sbjct: 469 VFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFD 519
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 443 VVDVFVHGYMD--GIGLRDGHLYFFFDLNGIRLFDFIGHWFFDRVRYWFFN 297
V D+F + D G + D Y FD+ G +FD G+ FD Y F+
Sbjct: 477 VFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFD 527
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 443 VVDVFVHGYMD--GIGLRDGHLYFFFDLNGIRLFDFIGHWFFDRVRYWFFN 297
V D+F + D G + D Y FD+ G +FD G+ FD Y F+
Sbjct: 485 VFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFD 535
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 443 VVDVFVHGYMD--GIGLRDGHLYFFFDLNGIRLFDFIGHWFFDRVRYWFFN 297
V D+F + D G + D Y FD+ G +FD G+ FD Y F+
Sbjct: 269 VFDMFGYSVFDMFGYSVFDLFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFD 319
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 443 VVDVFVHGYMD--GIGLRDGHLYFFFDLNGIRLFDFIGHWFFDRVRYWFFN 297
V D+F + D G + D Y FD+ G +FD G+ FD Y F+
Sbjct: 277 VFDMFGYSVFDLFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDLFGYSVFD 327
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 443 VVDVFVHGYMD--GIGLRDGHLYFFFDLNGIRLFDFIGHWFFDRVRYWFFN 297
V D+F + D G + D Y FD+ G +FD G+ FD Y F+
Sbjct: 373 VFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFDLFGYSVFD 423
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 443 VVDVFVHGYMD--GIGLRDGHLYFFFDLNGIRLFDFIGHWFFDRVRYWFFN 297
V D+F + D G + D Y FD+ G +FD G+ FD Y F+
Sbjct: 397 VFDMFGYSVFDMFGYSVFDLFGYSVFDMFGYSVFDMFGYSVFDMFGYSVFD 447
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 443 VVDVFVHGYMD--GIGLRDGHLYFFFDLNGIRLFDFIGHWFFDRVRYWFFN 297
V D+F + D G + D Y FD+ G +FD G+ FD Y F+
Sbjct: 317 VFDLFGYSVFDMFGYSVFDLFGYSVFDMFGYSVFDMFGYSVFDMFCYSVFD 367
>SB_5940| Best HMM Match : Antimicrobial_3 (HMM E-Value=2.4)
Length = 409
Score = 30.7 bits (66), Expect = 1.2
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Frame = +1
Query: 109 HTHTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYPVHVT----VDNLSMYLF 276
H H + HVTV + V + V V+V +V V + + VHVT VD Y F
Sbjct: 77 HVHVTVSLHVHVTVSLHVHVTVSLHVHVTVSLHVHVTV--SFHVHVTVSLHVDVQCHYTF 134
Query: 277 IRLSTKLLKNQYRTRSKNQCPMKSKSLIPLRSK 375
++ +N TRS+N +S++ + RS+
Sbjct: 135 TVITRS--RNGVITRSRNGVITRSRNGVITRSR 165
>SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41)
Length = 689
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +1
Query: 220 IPQPYPVHVTVDNLSMY--LFIRLSTKLLKNQYRTRSKNQCPMKSKSLIPLRSKKK*RCP 393
I +PY +H+ + +Y +FIRL +Y + QCP S ++ K P
Sbjct: 244 IHEPYSLHILIKMNQVYCFIFIRLHLNTAHEKYDVCAWPQCPFVSDRTFDIQHKVPVAAP 303
Query: 394 SLSP 405
P
Sbjct: 304 RSKP 307
>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1446
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/69 (28%), Positives = 26/69 (37%)
Frame = +1
Query: 43 NSRPSLSSARQRSAF*RMGARSHTHTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVPI 222
NS PSL+ + S HT P H+ +I P+PH + I
Sbjct: 949 NSSPSLTPLYEERCQETPTDSSTASLAHTSPAHLATASQITHPLPHRT---------ISI 999
Query: 223 PQPYPVHVT 249
P P P H T
Sbjct: 1000 PYPSPPHTT 1008
>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
Length = 352
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 160 IGVPIPHPVAVSVPQYVKVPIPQPYPVHVTVDNLSMYLFIRLSTKLL 300
I P+P + V VPQ V P+PQP +V L L ++++ KL+
Sbjct: 119 ISPPLPMYIPVPVPQPVPQPVPQPASKGKSV--LDKILQLQMTLKLM 163
>SB_34680| Best HMM Match : WD40 (HMM E-Value=4.5e-07)
Length = 454
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -2
Query: 210 HVLRDRHSHRMGN-RNSDLLHHGHMVRLRVFCVRVASGSHSSEGRALASATKRRTTVVLK 34
H +R+ + R+ N ++ D++ + L FC V S + S +G +A +T + VLK
Sbjct: 198 HTIRETNELRVWNVKSMDMIKSVVLRDLSDFCGFVTSCNFSPDGSFIAFSTSQEQLCVLK 257
Query: 33 A 31
A
Sbjct: 258 A 258
>SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1499
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 160 IGVPIPHPVAVSVPQYVKVPIPQPYPVHVTVDNL 261
+ P P V V+ P V+VP P PV V V L
Sbjct: 839 VATPPPVRVTVATPPPVRVPAATPLPVRVPVATL 872
>SB_33357| Best HMM Match : Neur_chan_memb (HMM E-Value=8.3e-10)
Length = 306
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 115 HTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYPVHVTVDNLSMYLFI 279
+ EHT ++ ++ I I +PV + V VP +P P V L YL +
Sbjct: 150 NNEHTSNNYINILVTIRTEIVYPVRPVIGAAVAVPDRRPCPWVSYVKALDWYLIV 204
>SB_2633| Best HMM Match : Drf_FH1 (HMM E-Value=4)
Length = 179
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 169 PIPHPVAVSVPQY--VKVPIPQPYPVHVTVDN 258
PI HP+ V +P +KV +P +P+ V + N
Sbjct: 63 PIKHPIKVHLPNKHPIKVHLPNKHPIKVHLPN 94
>SB_1589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 410 GIGLRDGHLYFFFDLNGIRLFDFIGHWFFDRVR 312
GI D + D +R+F+F G+W F+ +R
Sbjct: 10 GIKPNDSWICLRDDFGDVRVFEFSGYWMFELLR 42
>SB_51795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 28.3 bits (60), Expect = 6.5
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = -3
Query: 365 NGIRLFDFIGHWFFDRVR 312
+G R+F+F+G+W F+ +R
Sbjct: 30 SGYRMFEFLGYWMFELLR 47
>SB_13194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 115 HTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIP 225
+ + T PY V + V +P+ V V+VP YV V +P
Sbjct: 58 YVDGTVPYVDVTVPYVDVTVPYNVDVTVP-YVDVTVP 93
>SB_11938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 115 HTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIP 225
+ + T PY V + V +P+ V V+VP YV V +P
Sbjct: 58 YVDGTVPYVDVTVPYVDVTVPYNVDVTVP-YVDVTVP 93
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,792,306
Number of Sequences: 59808
Number of extensions: 480077
Number of successful extensions: 1665
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1637
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -