Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30224
(715 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 35 0.050
U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical pr... 35 0.066
U53151-2|AAN73859.1| 385|Caenorhabditis elegans Serpentine rece... 33 0.27
Z81135-1|CAB03453.1| 627|Caenorhabditis elegans Hypothetical pr... 32 0.47
AY438643-1|AAR00670.1| 627|Caenorhabditis elegans abnormal DAue... 32 0.47
L15313-8|AAA28196.1| 469|Caenorhabditis elegans Hypothetical pr... 31 0.82
Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z81570-1|CAB04606.1| 749|Caenorhabditis elegans Hypothetical pr... 30 1.9
AY887910-1|AAX34422.1| 749|Caenorhabditis elegans anion transpo... 30 1.9
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 35.1 bits (77), Expect = 0.050
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 166 VPIPHPVAVSVPQYVKVPIPQPYPVH 243
VP+P PV V VP V VP+P P PV+
Sbjct: 156 VPVPVPVQVPVPIRVPVPVPVPTPVY 181
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +1
Query: 115 HTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYPVHVTV 252
H P V V ++ VP+P P V P Y VP P P P V
Sbjct: 155 HVPVPVPVQVPVPIRVPVPVPVPTPVYQPTYCAVP-PCPAPAATPV 199
>U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical
protein F35A5.5 protein.
Length = 125
Score = 34.7 bits (76), Expect = 0.066
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 133 PYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYPVHVTVDN 258
P + + P+P PV V +P + +P+P P PV V V +
Sbjct: 6 PIPIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPVPVPVQS 47
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 133 PYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYPVHVTV 252
P + + + VP P P V VP + +P+P P PV V V
Sbjct: 4 PIPIPIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPVPV 43
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 166 VPIPHPVAVSVPQYVKVPIPQPYPV 240
+P P P+ + P V P+PQP PV
Sbjct: 1 MPPPIPIPIPAPVPVPAPVPQPVPV 25
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 172 IPHPVAVSVPQYVKVPIPQPYPVHV 246
+P P+ + +P V VP P P PV V
Sbjct: 1 MPPPIPIPIPAPVPVPAPVPQPVPV 25
>U53151-2|AAN73859.1| 385|Caenorhabditis elegans Serpentine
receptor, class r protein10 protein.
Length = 385
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -3
Query: 182 GWGIGTPIFFTTVTWYGFVCSVCV--WLRAPILQK 84
GWG G FF +GFVCS+CV W + ++QK
Sbjct: 72 GWGEGN--FFGYSALFGFVCSLCVFGWTKNGLVQK 104
>Z81135-1|CAB03453.1| 627|Caenorhabditis elegans Hypothetical
protein W01G7.1 protein.
Length = 627
Score = 31.9 bits (69), Expect = 0.47
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 157 KIGVPIPHPVAVSVPQYVKVPIPQPYPVHVTVDNLSMYLFIRLSTKLLKNQY 312
K+ +PI P VS P V PIP P+ D L L +S+ L + Y
Sbjct: 554 KLPLPIVTPPVVSTPAPVITPIPAALPISPNSDFLKQQLSTAMSSPALLSLY 605
>AY438643-1|AAR00670.1| 627|Caenorhabditis elegans abnormal DAuer
Formation DAF-5,a Ski oncogene homolog involved in a
neuronal TGF betapathway (71.0 kD) (daf-5) protein.
Length = 627
Score = 31.9 bits (69), Expect = 0.47
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 157 KIGVPIPHPVAVSVPQYVKVPIPQPYPVHVTVDNLSMYLFIRLSTKLLKNQY 312
K+ +PI P VS P V PIP P+ D L L +S+ L + Y
Sbjct: 554 KLPLPIVTPPVVSTPAPVITPIPAALPISPNSDFLKQQLSTAMSSPALLSLY 605
>L15313-8|AAA28196.1| 469|Caenorhabditis elegans Hypothetical
protein ZK353.8 protein.
Length = 469
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 157 KIGVPIPHPVAVSVPQYVKVPIPQPYPVHVTVDNLS 264
++ P P P V VP PIP P PV + + S
Sbjct: 125 QLSTPSPSPAPVQVPASTDAPIPAPTPVTAPIQSSS 160
>Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical
protein B0393.4 protein.
Length = 803
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 142 VTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYPV 240
V V + P+P PV VP+ PI +P PV
Sbjct: 108 VAVTLPVPEPVPEPVPEPVPESTPEPISEPLPV 140
>Z81570-1|CAB04606.1| 749|Caenorhabditis elegans Hypothetical
protein K12G11.1 protein.
Length = 749
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +1
Query: 142 VTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYPVHVTVDNLSMYLFIRLSTKLLKNQY 312
V VV KI V +P+ S+P + +P P + +TV ++S++L I +K+L +Y
Sbjct: 349 VQVVNKIPVGVPN---FSLPSFYLIPQVLPDAISITVVSISVWLSI---SKMLAKRY 399
>AY887910-1|AAX34422.1| 749|Caenorhabditis elegans anion
transporter SULP-4 protein.
Length = 749
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +1
Query: 142 VTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYPVHVTVDNLSMYLFIRLSTKLLKNQY 312
V VV KI V +P+ S+P + +P P + +TV ++S++L I +K+L +Y
Sbjct: 349 VQVVNKIPVGVPN---FSLPSFYLIPQVLPDAISITVVSISVWLSI---SKMLAKRY 399
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,940,631
Number of Sequences: 27780
Number of extensions: 360578
Number of successful extensions: 1266
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -