Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30224
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00...    29   2.3  
At3g17690.1 68416.m02258 cyclic nucleotide-binding transporter 2...    29   3.1  
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi...    29   4.0  
At5g02210.1 68418.m00142 expressed protein ; expression supporte...    28   5.3  
At2g05180.1 68415.m00545 cytochrome P450 family protein similar ...    28   5.3  
At1g42700.1 68414.m04928 hypothetical protein                          28   5.3  
At3g50870.1 68416.m05570 zinc finger (GATA type) family protein ...    28   7.1  
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ...    28   7.1  
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ...    28   7.1  
At4g32300.1 68417.m04596 lectin protein kinase family protein co...    27   9.3  
At3g62060.1 68416.m06973 pectinacetylesterase family protein sim...    27   9.3  

>At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 435

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +1

Query: 139 HVTVVKKIGVPIPHPVAVSVPQYVKVPIPQP 231
           H+ +   + +P+P P+A+++P  + +P+P P
Sbjct: 372 HMHMPMPMAMPMPMPIAMAMPMPMPMPMPMP 402


>At3g17690.1 68416.m02258 cyclic nucleotide-binding transporter 2 /
           CNBT2 (CNGC19) identical to cyclic nucleotide-binding
           transporter 2 (CNBT2) GI:8131900 from [Arabidopsis
           thaliana]; member of the cyclic nucleotide-gated channel
           family (CNGC)- see PMID:11500563
          Length = 743

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 213 LHVLRDRHSHRMGNRNSDLLHHGHMVRLRVFCVRVASGSHSSEGRAL 73
           L  +R+R   R   R+S +LHH  +V   VF VR    S   +G  L
Sbjct: 569 LDSIRERLKQRTYIRSSTVLHHRGLVEKMVFIVRGEMESIGEDGSVL 615


>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
           to proline-rich protein [Arabidopsis thaliana]
           gi|6782442|gb|AAF28388; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 448

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 121 EHTKPYHVTVVKKIGVPIPHPVAVSVPQYV--KVPIPQPYPVH 243
           EH   Y   +VKK   P P PV +  P  V  K P P P PV+
Sbjct: 362 EHPPIYIPPIVKK---PCPPPVPIYKPPVVIPKKPCPPPVPVY 401


>At5g02210.1 68418.m00142 expressed protein ; expression supported
           by MPSS
          Length = 161

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 283 LSTKLLKNQYRTRSKNQCPMKSK 351
           +S+++LK +YR++  NQ PM+ K
Sbjct: 4   ISSRILKPEYRSQYNNQIPMQEK 26


>At2g05180.1 68415.m00545 cytochrome P450 family protein similar to
           Cytochrome P450 93A1 (SP:Q42798)  {Glycine max}
          Length = 442

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 219 GHLHVLRDRHSHRMGNRNSDLLHHGHMVRLRVFCVRVASGSHSS 88
           GHLH+L    +H+   + S    +GH++ LR+F V V   S +S
Sbjct: 52  GHLHLLFSPLTHKSLQKLSS--KYGHLLHLRIFNVPVILVSSAS 93


>At1g42700.1 68414.m04928 hypothetical protein
          Length = 149

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +1

Query: 280 RLSTKLLKNQYRTRSKNQCPMKSKSLIPLRSKKK*---RCPSLSPIPSMYPCTNTSTTI 447
           +L+ K+++N   T   N  P  +     +  +++    RC  L P PS +    T+TT+
Sbjct: 22  KLAKKIIQNAGDTNGNNSTPNSNDDFAQVFGRERPGRVRCVGLGPTPSSFIQNRTTTTL 80


>At3g50870.1 68416.m05570 zinc finger (GATA type) family protein
           Arabidopsis thaliana mRNA for GATA transcription factor
           3, PID:e1254739
          Length = 295

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 93  NGSPKPHAHRTHEAVPCD-RGEEDRSSDSPSGGCVGPAVREGAH 221
           NG+P  H H T + VPC+    E R  D    G       +GAH
Sbjct: 229 NGTPWAHHHST-QRVPCNYPANEIRFMDDYGSGVANNVESDGAH 271


>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
           profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
           domain;
          Length = 299

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 169 PIPHPVAVSVPQYVKVPIPQPYPVHVT 249
           P P P  V+  + V  PIP+P P  ++
Sbjct: 130 PTPTPAPVAATETVTTPIPEPVPATIS 156


>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
           profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
           domain;
          Length = 419

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 169 PIPHPVAVSVPQYVKVPIPQPYPVHVT 249
           P P P  V+  + V  PIP+P P  ++
Sbjct: 130 PTPTPAPVAATETVTTPIPEPVPATIS 156


>At4g32300.1 68417.m04596 lectin protein kinase family protein
           contains Pfam domains, PF01453: Lectin (probable mannose
           binding) and PF00069: Protein kinase domain
          Length = 821

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 156 LHHGHMVRLRVFCVRVASGSH 94
           +HH H+VRLR FC   A G+H
Sbjct: 543 IHHLHLVRLRGFC---AEGAH 560


>At3g62060.1 68416.m06973 pectinacetylesterase family protein
           similar to pectinacetylesterase precursor GI:1431629
           from [Vigna radiata]; contains Pfam profile: PF03283
           pectinacetylesterase
          Length = 419

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 368 LNGIRLFDFIGHWFFDRVR 312
           LNG R+ + +G W+FDR +
Sbjct: 380 LNGKRVAESVGDWYFDRAK 398


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,841,813
Number of Sequences: 28952
Number of extensions: 324044
Number of successful extensions: 971
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)