Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30222
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 107 1e-24
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 104 1e-23
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch... 29 0.50
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 28 1.1
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 28 1.1
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 27 2.0
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 27 2.0
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 3.5
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 26 6.1
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 6.1
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 8.1
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 107 bits (258), Expect = 1e-24
Identities = 51/95 (53%), Positives = 71/95 (74%)
Frame = +2
Query: 218 GNENCFGRIEGKIFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKL 397
G +N ++G+I EVSLADLQ D E SFRK +L E +QG++ L +F+G D+T+DKL
Sbjct: 53 GLKNANDSLKGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKL 110
Query: 398 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNK 502
R +V+KWQ+ IEAN +KTTDGY+ R+F IGFT++
Sbjct: 111 RSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSR 145
Score = 70.1 bits (164), Expect = 3e-13
Identities = 29/45 (64%), Positives = 36/45 (80%)
Frame = +3
Query: 120 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGR 254
+VDPF+RKDWYD+KAP+ F + VG TLVNRT G K A++ LKGR
Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGR 64
Score = 54.0 bits (124), Expect = 2e-08
Identities = 26/64 (40%), Positives = 40/64 (62%)
Frame = +1
Query: 517 RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKGHREGPAMGIYPLRD 696
+KT YAQ +Q+RAI +KM ++I ++E+V KLIP+ I + E IYPL++
Sbjct: 151 KKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRA-IEKATNNIYPLQN 209
Query: 697 VCIR 708
V +R
Sbjct: 210 VFVR 213
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 104 bits (250), Expect = 1e-23
Identities = 50/95 (52%), Positives = 70/95 (73%)
Frame = +2
Query: 218 GNENCFGRIEGKIFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKL 397
G +N ++G+I EVSLADLQ D E +FRK +L E +QG++ L +F+G+ +T+DKL
Sbjct: 53 GLKNANDSLKGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKL 110
Query: 398 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNK 502
R +V+KWQT IEA+ +KTTDGY+ RVF IGFT +
Sbjct: 111 RSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRR 145
Score = 68.5 bits (160), Expect = 9e-13
Identities = 28/45 (62%), Positives = 36/45 (80%)
Frame = +3
Query: 120 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGR 254
+VDPF+RK+WYD+KAP+ F + VG TLVNRT G K A++ LKGR
Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGR 64
Score = 56.4 bits (130), Expect = 4e-09
Identities = 27/64 (42%), Positives = 43/64 (67%)
Frame = +1
Query: 517 RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKGHREGPAMGIYPLRD 696
+KT YAQ +Q+RAIR+KM ++I ++ +RE+V KLIP+ I + E I+PL++
Sbjct: 151 KKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGR-EIERATGSIFPLQN 209
Query: 697 VCIR 708
V +R
Sbjct: 210 VLVR 213
>SPAC25B8.15c |||wybutosine biosynthesis protein
Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 237
Score = 29.5 bits (63), Expect = 0.50
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 580 ITRDVTNSELREVVNKLIPDSIAKGHREGPAMGIYPLRDV 699
++ D E+ E + +PD+ KGH + P I+PL DV
Sbjct: 8 VSFDAQKKEILEGLKSSVPDASPKGHPDSP---IFPLLDV 44
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 462 DTFYVSSALVSPIRTPEPTQDVLRPAHSGQSNQKEN 569
D F LV P+R+P PT + L G++ Q E+
Sbjct: 171 DPFEDPPDLVEPLRSPSPTPEQLATVRIGENEQIES 206
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 254 IFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 427
+F+V + + D R+ + +A Q R V C H MDL + LR +V ++ L
Sbjct: 86 VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143
Query: 428 IEANIDVKTT 457
+E + D++TT
Sbjct: 144 LETSKDLETT 153
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = +2
Query: 278 LQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIE-ANIDVKT 454
L+ DAE + + F I EY++ N D T K + +W ++ E +
Sbjct: 106 LKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGK---FINEWDSIFEPVKSEFNL 162
Query: 455 TDGYVLRVFCIGFTNKDS*ANARRAT 532
D + C+ ++ AN + A+
Sbjct: 163 VDASLGLAKCLAIKDEQELANIKGAS 188
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 574 EIITRDVTNSELREVVNKLIPDSIAKGHREGPAMGI 681
E ++ DV+ +L++V+ K + HRE P G+
Sbjct: 103 ENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGV 138
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 421 LPFFNHPPELIGCEVHAVEVAEHITS 344
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 327 INLNLRKDLSASVSACRSARETSKIFPSILPKQFSFPGYG*QAWC 193
I+LN+ D SA + ++ IFPS + F YG + WC
Sbjct: 497 ISLNI-SDSKIPTSAYMPSYYSAVIFPSSISSIFQKYNYGGKYWC 540
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +1
Query: 562 KKMCEIITRDVTNSELREVVNKLIPDSIAKGHRE 663
+K ++ +++ N++L+ +NK I I + H+E
Sbjct: 415 QKALYVLKKELLNAQLQHKINKEIEQKITQRHKE 448
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 377 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 475
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,718
Number of Sequences: 5004
Number of extensions: 62562
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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