Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30222
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 126 2e-29
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 124 7e-29
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 123 1e-28
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236... 30 1.6
06_03_0290 - 19193707-19193752,19193822-19194090 28 6.4
11_04_0407 + 17335773-17335777,17335930-17336635,17336844-173375... 28 8.4
04_04_0783 - 28040828-28041615,28041942-28043589 28 8.4
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 126 bits (303), Expect = 2e-29
Identities = 64/112 (57%), Positives = 80/112 (71%)
Frame = +2
Query: 242 IEGKIFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 421
++ ++FEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQ
Sbjct: 61 LKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQ 118
Query: 422 TLIEANIDVKTTDGYVLRVFCIGFTNKDS*ANARRATPSTLRSEQSERKCVK 577
TLIEA++DVKTTDGY+LR+FCIGFT + R + Q RK V+
Sbjct: 119 TLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 77.4 bits (182), Expect = 1e-14
Identities = 33/44 (75%), Positives = 39/44 (88%)
Frame = +3
Query: 123 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGR 254
VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK R
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHR 64
Score = 59.3 bits (137), Expect = 3e-09
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = +1
Query: 517 RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKGHREGPAMGIYPLRD 696
++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K E I+PL++
Sbjct: 151 KRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGK-EIEKATSSIFPLQN 209
Query: 697 VCIR 708
V +R
Sbjct: 210 VFVR 213
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 124 bits (299), Expect = 7e-29
Identities = 64/112 (57%), Positives = 79/112 (70%)
Frame = +2
Query: 242 IEGKIFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 421
++ ++FEVSLADLQ D D +++RK RL AE VQGRNVL NF GM TTDKLR +VKKWQ
Sbjct: 61 LKHRVFEVSLADLQNDED--QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQ 118
Query: 422 TLIEANIDVKTTDGYVLRVFCIGFTNKDS*ANARRATPSTLRSEQSERKCVK 577
TLIEA++DVKTTD Y+LR+FCIGFT + R + Q RK V+
Sbjct: 119 TLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 77.8 bits (183), Expect = 8e-15
Identities = 33/44 (75%), Positives = 40/44 (90%)
Frame = +3
Query: 123 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGR 254
VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK R
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHR 64
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/64 (43%), Positives = 43/64 (67%)
Frame = +1
Query: 517 RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKGHREGPAMGIYPLRD 696
++TCYAQ +Q+R IR+KM EI+ + +L+E+V+K IP+ I K E I+PL++
Sbjct: 151 KRTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGK-EIEKSTSSIFPLQN 209
Query: 697 VCIR 708
V IR
Sbjct: 210 VFIR 213
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 123 bits (297), Expect = 1e-28
Identities = 63/112 (56%), Positives = 79/112 (70%)
Frame = +2
Query: 242 IEGKIFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 421
++ ++FEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQ
Sbjct: 61 LKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQ 118
Query: 422 TLIEANIDVKTTDGYVLRVFCIGFTNKDS*ANARRATPSTLRSEQSERKCVK 577
TLIEA++DVKTTD Y+LR+FCIGFT + R + Q RK V+
Sbjct: 119 TLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 77.8 bits (183), Expect = 8e-15
Identities = 34/44 (77%), Positives = 39/44 (88%)
Frame = +3
Query: 123 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGR 254
VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK R
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHR 64
Score = 59.3 bits (137), Expect = 3e-09
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = +1
Query: 517 RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKGHREGPAMGIYPLRD 696
++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K E I+PL++
Sbjct: 151 KRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGK-EIEKATSSIFPLQN 209
Query: 697 VCIR 708
V +R
Sbjct: 210 VFVR 213
>04_03_0983 +
21423086-21423280,21423330-21423404,21423531-21423632,
21423721-21423774,21423880-21423972,21424526-21424618,
21427329-21427433,21427517-21427615,21427701-21427997,
21428512-21428622
Length = 407
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = -3
Query: 399 LSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARETSKIFPSI-LPKQFS 223
+++ +R+ PW L++ R T +A + +KD SA + +S E KI P + S
Sbjct: 274 ITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMKIVEEARTPPRSS 333
Query: 222 FP--GYG*Q 202
P G+G Q
Sbjct: 334 TPVAGFGWQ 342
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 357 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 446
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>11_04_0407 +
17335773-17335777,17335930-17336635,17336844-17337542,
17340710-17340724,17341479-17342126
Length = 690
Score = 27.9 bits (59), Expect = 8.4
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Frame = -1
Query: 362 CRAHYVLAHIRRLI*ICGK-TFPRQCQLVDQ--PGKLRKSSLQSFRSNFRSLGTVDKRGA 192
CR H +L+HIR I + K TFP C + + G LR + L T++
Sbjct: 274 CRDHCLLSHIRYAIRLRKKVTFPDMCPVWPEMLKGSLRAMAYLIAGVTEVELETLESIFN 333
Query: 191 DLPLA---EHRRSLDI-VPIFA 138
+LPL H+R DI +P A
Sbjct: 334 ELPLGMIMGHKRFPDIMIPTIA 355
>04_04_0783 - 28040828-28041615,28041942-28043589
Length = 811
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = -3
Query: 483 QKTRRTYPSVVFTSMLASMRVCHFLTIHLSLSVVRSMPWKLQST-LRPCTYSAINLNLRK 307
+ T R YP+ + + ++ +R +T+H + +S K ST + C ++L +
Sbjct: 609 EATTRRYPATMHGAFISGLREAANITLHANARAAKSKVEKGPSTNTQACAALLMDLFRQP 668
Query: 306 DLS-ASVSACRSARETSKIFPSILPKQFSFP 217
DL S S + + P+IL + P
Sbjct: 669 DLEFGSFSVIFGGQASDPKSPAILKVELGGP 699
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,218,056
Number of Sequences: 37544
Number of extensions: 454260
Number of successful extensions: 1262
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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