Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30222
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   113   1e-25
Z81103-2|CAB03213.1|  403|Caenorhabditis elegans Hypothetical pr...    33   0.27 
Z81103-1|CAB03208.2|  457|Caenorhabditis elegans Hypothetical pr...    33   0.27 
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    32   0.47 
Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z83230-1|CAB05741.1| 1049|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z68003-3|CAA91977.1|  849|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.       28   7.6  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  113 bits (272), Expect = 1e-25
 Identities = 56/87 (64%), Positives = 66/87 (75%)
 Frame = +2

Query: 242 IEGKIFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 421
           ++G++FEVSL DL    ++E  FRKF+LIAE VQG+NVL NFH M +T DKL  +VKKW 
Sbjct: 60  LKGRVFEVSLGDLN---NSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWH 116

Query: 422 TLIEANIDVKTTDGYVLRVFCIGFTNK 502
           TLIEAN  VKTTDGY LRVF I FT K
Sbjct: 117 TLIEANTAVKTTDGYTLRVFVIAFTKK 143



 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 36/44 (81%), Positives = 42/44 (95%)
 Frame = +3

Query: 123 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGR 254
           VDPF+RK+WYD+KAP+MF+ RQVG TL+NRTQGTKIASEGLKGR
Sbjct: 20  VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGR 63



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 29/64 (45%), Positives = 43/64 (67%)
 Frame = +1

Query: 517 RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKGHREGPAMGIYPLRD 696
           +KT Y + +++R IR +M   I ++VT  +L+EVV+KLIPDSI K   E     +YPL++
Sbjct: 149 KKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGK-DIEKTCSKLYPLQE 207

Query: 697 VCIR 708
           V IR
Sbjct: 208 VYIR 211


>Z81103-2|CAB03213.1|  403|Caenorhabditis elegans Hypothetical
           protein M04G12.1b protein.
          Length = 403

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +3

Query: 438 TLM*RQPMDTFYVSSA----LVSPIRTPEPTQDVLRPAHSGQSNQKENV*NH 581
           TL  +QP+ T  V+SA     +SP RTP+PT     P H    N  E V  H
Sbjct: 117 TLTQQQPLQTLPVTSANGIGRISPQRTPQPTVLPTSPFHVPTMNNLEQVLTH 168


>Z81103-1|CAB03208.2|  457|Caenorhabditis elegans Hypothetical
           protein M04G12.1a protein.
          Length = 457

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +3

Query: 438 TLM*RQPMDTFYVSSA----LVSPIRTPEPTQDVLRPAHSGQSNQKENV*NH 581
           TL  +QP+ T  V+SA     +SP RTP+PT     P H    N  E V  H
Sbjct: 144 TLTQQQPLQTLPVTSANGIGRISPQRTPQPTVLPTSPFHVPTMNNLEQVLTH 195


>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
           see also lmb-protein 2 protein.
          Length = 1535

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -2

Query: 544 ECAGRSTSCVGSGVLIGETNAEDT*NVSIGCLHINVGFD--ESLPFFNHPPELIGCEVHA 371
           +C G ++ CVGS  + GE        +   C H   G D  E LPF+N  P   G  V A
Sbjct: 273 KCNGHASECVGSSSVDGEN------RLVCRCEHNTQGADCNECLPFYNDRPWRSGTSVEA 326

Query: 370 VE 365
            E
Sbjct: 327 NE 328


>Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical
           protein B0001.7 protein.
          Length = 731

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 230 CFGRIEGKIFEVSLADLQADTDAERSFRKFRLIAEYVQGRN 352
           C G + G  + +S+ D +A TD E S +  R IAE+++ R+
Sbjct: 197 CGGSLRGCSWIMSVVDGKAQTDGEFSDKDLREIAEFIRERH 237


>Z83230-1|CAB05741.1| 1049|Caenorhabditis elegans Hypothetical
           protein F56A8.1 protein.
          Length = 1049

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = -1

Query: 179 AEHRRSLDIVPIFASEWVDNLLLNTFFTALRQAFIFPRAEFLQPGG 42
           +EH  SL IV IFA + V     NT+ +    AFI P +  LQP G
Sbjct: 499 SEHNNSL-IVKIFAFQMV-----NTYTSLFYVAFIRPESHGLQPNG 538


>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical protein
            C25G4.5 protein.
          Length = 1263

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 426  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSAR 268
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKR 1174


>Z68003-3|CAA91977.1|  849|Caenorhabditis elegans Hypothetical
           protein E02H4.4 protein.
          Length = 849

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 192 GTTLVNRTQGTKIASEGLKGRF-SKFPWLIYKLTLTRKGLSANSD 323
           GT L+  ++G  + S   K    S  P +  K T T  G+S N D
Sbjct: 95  GTPLIQISEGENVLSGSSKSNIKSTLPRITVKYTQTGNGISVNGD 139


>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
          Length = 1263

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 426  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSAR 268
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKR 1174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,094,664
Number of Sequences: 27780
Number of extensions: 364827
Number of successful extensions: 1067
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)