Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30222
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   126   2e-29
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           123   1e-28
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    30   1.7  
At3g10000.1 68416.m01200 DNA-binding protein-related similar to ...    29   4.0  
At3g50950.2 68416.m05579 disease resistance protein (CC-NBS-LRR ...    28   7.0  
At3g50950.1 68416.m05578 disease resistance protein (CC-NBS-LRR ...    28   7.0  
At2g21630.1 68415.m02573 transport protein, putative similar to ...    27   9.3  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  126 bits (303), Expect = 2e-29
 Identities = 63/109 (57%), Positives = 77/109 (70%)
 Frame = +2

Query: 242 IEGKIFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 421
           ++ ++FEVSLADLQ D D   ++RK RL AE VQGRNVLC F GMD TTDKLR +VKKWQ
Sbjct: 61  LKHRVFEVSLADLQGDED--NAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQ 118

Query: 422 TLIEANIDVKTTDGYVLRVFCIGFTNKDS*ANARRATPSTLRSEQSERK 568
           TLIEA++DVKTTD Y LR+FCI FT + +    R     + +  Q  RK
Sbjct: 119 TLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRK 167



 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 35/44 (79%), Positives = 40/44 (90%)
 Frame = +3

Query: 123 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGR 254
           VDPF++KDWYDVKAPS+F+ R VG TLV+RTQGTKIASEGLK R
Sbjct: 21  VDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHR 64



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 28/64 (43%), Positives = 47/64 (73%)
 Frame = +1

Query: 517 RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKGHREGPAMGIYPLRD 696
           ++TCYAQ +Q+R IR+KM +I+ R+ ++ +L+++V K IP++I +   E    GIYPL++
Sbjct: 151 KRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGR-EIEKATQGIYPLQN 209

Query: 697 VCIR 708
           V IR
Sbjct: 210 VFIR 213


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  123 bits (297), Expect = 1e-28
 Identities = 63/109 (57%), Positives = 77/109 (70%)
 Frame = +2

Query: 242 IEGKIFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 421
           ++ ++FEVSLADLQ D D   ++RK RL AE VQGRNVL  F GMD TTDKLR +VKKWQ
Sbjct: 61  LKHRVFEVSLADLQNDED--NAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQ 118

Query: 422 TLIEANIDVKTTDGYVLRVFCIGFTNKDS*ANARRATPSTLRSEQSERK 568
           TLIEA++DVKTTDGY LR+FCI FT + +    R     + +  Q  RK
Sbjct: 119 TLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRK 167



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 34/44 (77%), Positives = 38/44 (86%)
 Frame = +3

Query: 123 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGR 254
           VDPF++KDWYDVKAP  F+ R VG TLV+RTQGTKIASEGLK R
Sbjct: 21  VDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHR 64



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 29/64 (45%), Positives = 47/64 (73%)
 Frame = +1

Query: 517 RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKGHREGPAMGIYPLRD 696
           ++TCYAQ +Q+R IR+KM EI+ ++ ++ +L+E+V K IP++I +   E    GIYPL++
Sbjct: 151 KRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGR-EIEKATQGIYPLQN 209

Query: 697 VCIR 708
           V IR
Sbjct: 210 VFIR 213


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = -1

Query: 266  KLRKSSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLN 108
            KL  S LQS RS F +L  + K  A +   ++ + L++V +  S+W+    LN
Sbjct: 1572 KLIPSWLQSNRSVFDTLVLIWKSPARISRLQNEQELNLVQVKESKWLVKCFLN 1624


>At3g10000.1 68416.m01200 DNA-binding protein-related similar to
           GT-2 factor [Arabidopsis thaliana GI:416490
          Length = 496

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 125 DNLLLNTFFTALRQAFIFPRAEFLQPGGSTSSRAXRHR 12
           D +  + F T +  +FIFP++ FL+ G + S +  R +
Sbjct: 119 DEVSRSHFLTLIFSSFIFPKSPFLEHGYTRSGKKCREK 156


>At3g50950.2 68416.m05579 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 852

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 206 QPYPGNENCFGRIEGKIFEVSLADLQAD 289
           +P+ GNEN   RIEG +   SL+DL  D
Sbjct: 781 EPFWGNENTHWRIEGLMLS-SLSDLDMD 807


>At3g50950.1 68416.m05578 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 852

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 206 QPYPGNENCFGRIEGKIFEVSLADLQAD 289
           +P+ GNEN   RIEG +   SL+DL  D
Sbjct: 781 EPFWGNENTHWRIEGLMLS-SLSDLDMD 807


>At2g21630.1 68415.m02573 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 761

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 420 CHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSAR 268
           CHF T+H  L  + + PW + +  RP   + + L +   L  +     +AR
Sbjct: 238 CHF-TLHSVLEELGNSPWPVAADHRPARCTGVALRIAASLLGACFPGSAAR 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,270,537
Number of Sequences: 28952
Number of extensions: 343209
Number of successful extensions: 976
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)