Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30221
         (596 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.6  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   6.0  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   6.0  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 547 QRRYFE*VFISC*KCSLF 494
           Q RYF  +F+S  KC LF
Sbjct: 293 QSRYFIYMFVSVWKCLLF 310


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 547 QRRYFE*VFISC*KCSLF 494
           Q RYF  +F+S  KC LF
Sbjct: 293 QSRYFIYMFVSVWKCLLF 310


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 547 QRRYFE*VFISC*KCSLF 494
           Q RYF  +F+S  KC LF
Sbjct: 293 QSRYFIYMFVSVWKCLLF 310


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 547 QRRYFE*VFISC*KCSLF 494
           Q RYF  +F+S  KC LF
Sbjct: 293 QSRYFIYMFVSVWKCLLF 310


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 277 PRRSEVRGRTEPHRRRPESHR 339
           PR ++ + R EP R RP   R
Sbjct: 318 PRATDHQRRNEPKRPRPNIDR 338


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -1

Query: 104 RSSGSTRCVFNMWWTFRGLPHGTSLETRPR 15
           +S GS++  FN +W    +     ++ +PR
Sbjct: 438 QSQGSSKNTFNTFWQQSDVDLSRGMDFQPR 467


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,657
Number of Sequences: 336
Number of extensions: 2465
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)