Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30221
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    39   6e-04
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    28   0.90 
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    28   1.2  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    28   1.2  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   6.3  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    25   6.3  
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...    25   8.4  
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.4  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 38.7 bits (86), Expect = 6e-04
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = +2

Query: 257 LQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETVKSTAPGY 436
           L  +D  L   +Y AG   T AD  +   + + +   +  K Y N+KRW   V S  P  
Sbjct: 148 LDYIDNHLASNEYFAGEQFTAADPQMCFPIFAAQRDYLSQKPYKNIKRWMRVV-SDRPAC 206

Query: 437 QEANEK 454
           + A EK
Sbjct: 207 RIAAEK 212


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +2

Query: 389 NVKRWYETVKSTAPGYQEANEKGLEAFKGLVNSMLKK*T 505
           +V + YE+++S    Y+ ANEK  EA   +V+S L + T
Sbjct: 739 SVHKNYESLRSQLLEYKAANEKHTEAILSVVSSTLTENT 777


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 502 SLFKHAIDKSLECLQSFLVGLLVTRSCTLNRLVPS 398
           S +K++++  L CL  +L+   +TRS T+ + V S
Sbjct: 51  SWYKYSLESGLVCLYLYLIYRWITRSFTVKQTVGS 85


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +2

Query: 287 QKYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETVKSTAPGYQEANEKGLEA 466
           +KY   P L    LS  A+  S+  S        + + WY+ V     G  E +E   EA
Sbjct: 139 EKYGEQPTLAQKKLSNAAAAKSVPGSSSSSSDPMHPQHWYDRVLEGLVGANENSENNREA 198


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 272 KFLEGQKYVAGPNLTVADLSLIASVSSLEASDI 370
           +F   Q+Y+    +   DL ++A   SLEA DI
Sbjct: 459 EFQSTQRYLVLSEIGETDLDILAEPKSLEACDI 491


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 484 IDKSLECLQSFLVGLLVTRSCTLNRLVPSLNVGVFLE 374
           ++ S  CLQS L G  V  +   +  VPS NV  F E
Sbjct: 216 VNTSASCLQSLLDGEKVYGTSDKDFYVPSKNVEYFRE 252


>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 448 VGLLVTRSCTLNRLVPSLNVGVFLEVNVRG 359
           VGL  TR+C  ++  P  +V +FL     G
Sbjct: 82  VGLEYTRNCDCDQYCPKCSVELFLNAKCTG 111


>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 7   NALLGRVSSEVPC--GSPRKVHHMLKTHRVEP 96
           N+++ R S+   C   SPR++H  ++ H   P
Sbjct: 163 NSIVSRTSNPFSCLNHSPRQIHKTVRNHLFSP 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,280
Number of Sequences: 5004
Number of extensions: 43334
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)