Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30221
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0248 - 1932992-1933423,1933440-1933489,1933558-1933606,193... 35 0.043
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 35 0.057
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 35 0.057
03_01_0247 - 1929000-1929475,1929566-1929614,1929732-1929884 34 0.099
03_01_0246 - 1918935-1919689,1919771-1919819,1919894-1920049 34 0.099
02_02_0405 + 9885202-9885415,9885515-9885861,9885941-9886516,988... 33 0.17
10_08_0807 - 20712066-20712290,20712750-20713339,20713415-207134... 32 0.40
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 31 0.53
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530... 31 0.53
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 30 1.6
12_01_0383 - 3006974-3007200,3007808-3007985,3008398-3008478,300... 29 2.8
01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110 29 2.8
01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188 28 4.9
07_01_1021 + 8736032-8736106,8736336-8736374,8737362-8737493,873... 27 8.6
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 27 8.6
>03_01_0248 -
1932992-1933423,1933440-1933489,1933558-1933606,
1933688-1933840
Length = 227
Score = 35.1 bits (77), Expect = 0.043
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +2
Query: 236 EREGTGTLQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKKYA---NVKRWY 406
E++ L + D+ L +Y+AG T+ADLS + + + +S+ K + NV RWY
Sbjct: 144 EKKLQQVLNVYDEILSKNEYLAGDEFTLADLSHLPNSHYIVSSERGRKLFTGRKNVARWY 203
Query: 407 ETV 415
+ +
Sbjct: 204 DQI 206
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 34.7 bits (76), Expect = 0.057
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +2
Query: 257 LQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETV 415
L+ L++ L G+ YV+G ++ D+ + A+V S ++ + N RWY+TV
Sbjct: 14 LKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAE-----FPNAARWYDTV 61
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 34.7 bits (76), Expect = 0.057
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +2
Query: 257 LQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETVKS 421
LQ LD++L + Y++G + D+++ S+ S A+ Y NV RWY+ + +
Sbjct: 33 LQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAAS-----YVNVTRWYDHISA 82
>03_01_0247 - 1929000-1929475,1929566-1929614,1929732-1929884
Length = 225
Score = 33.9 bits (74), Expect = 0.099
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Frame = +2
Query: 236 EREGTGTLQLLDKFLEGQKYVAGPNLTVADLS------LIASVSSLEASDIDFKKYANVK 397
ER+ L + D+ L KY+AG T+ADLS I + S + F +V
Sbjct: 140 ERKLQQMLNVYDEILAKNKYLAGDEFTLADLSHLPNSHYIVNARSPRGKKL-FTSKKHVA 198
Query: 398 RWYETVKSTA 427
RWYE + + A
Sbjct: 199 RWYEEISNRA 208
>03_01_0246 - 1918935-1919689,1919771-1919819,1919894-1920049
Length = 319
Score = 33.9 bits (74), Expect = 0.099
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +2
Query: 257 LQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEA---SDIDFKKYANVKRWYETVKS 421
L + ++ LE Y+AG T+ADLS + + L + S F+ NV RW+ + S
Sbjct: 202 LDIYEQRLEEAAYLAGDKFTIADLSHLPNADRLASDPRSRRMFEARKNVSRWWNNISS 259
>02_02_0405 +
9885202-9885415,9885515-9885861,9885941-9886516,
9886599-9887003
Length = 513
Score = 33.1 bits (72), Expect = 0.17
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Frame = +2
Query: 218 PSRQGQEREGTGTLQLLDKFLEGQKYVAGPNLTVADLSLIASVSS-LEASDIDFKKYANV 394
P+RQ E GT T++++ + P L D LI + + ++ S+ ++K +
Sbjct: 150 PTRQTAEN-GT-TMEIMSTAQRRDLQMNVPALRKLDAMLIGYMDNFVDQSEFWYEKGGDN 207
Query: 395 KR-----WYETVKSTAPGYQEANEKGLEAFKGLVNSMLK 496
KR W TVK A G E K L+ K VN +LK
Sbjct: 208 KRDDDKWWMPTVKVPAEGLSEVTRKWLQYQKECVNQVLK 246
>10_08_0807 -
20712066-20712290,20712750-20713339,20713415-20713463,
20713669-20713821
Length = 338
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 239 REGTGTLQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFK---KYANVKRWYE 409
+E + L + ++ LE +Y+AG T+ADLS + + L A + NV RW+
Sbjct: 195 KELSKVLDIYEQRLEEAEYLAGDKFTLADLSHLPNADRLAADPRTLRMLQSRRNVSRWWA 254
Query: 410 TV 415
V
Sbjct: 255 DV 256
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = +2
Query: 266 LDKFLEGQKYVAGPNLTVADLSL---IASVSSLEASDIDFKKYANVKRWYETVKSTAPGY 436
+D +L + ++ G LT+AD+++ +A + S KKY N+ RW+ + S Y
Sbjct: 100 VDGYLMSRTFLVGHVLTIADITVWSNLAGIGQRWESLRKSKKYQNLVRWFNGIDS---DY 156
Query: 437 QEANEKGLEAFKG 475
++ + + A+ G
Sbjct: 157 KDTLNEVIAAYVG 169
>01_04_0021 -
15151645-15151809,15152184-15152343,15152548-15153025,
15153243-15153291,15153585-15153734
Length = 333
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +2
Query: 278 LEGQKYVAGPNLTVADLSLIASVSSLEASDID--FKKYANVKRWYETV 415
L G +Y+AG +++ADLS +++ A++ Y +VK W+E +
Sbjct: 153 LSGSRYLAGDRISLADLSHFSNMRYFMATEYAGVVDAYPHVKAWWEAL 200
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Frame = +2
Query: 200 PSIRRCPSRQGQEREGTGTLQ-LLDKF---LEGQKYVAGPNLTVADLSLIASVSSLEASD 367
P +R P+ Q E L+ +L+ + L G +Y+AG L+ ADL+ A+
Sbjct: 124 PIMRGVPTNQQVVHESLEKLKKVLETYEARLSGSRYLAGDFLSFADLNHFPFTFYFMATP 183
Query: 368 ID--FKKYANVKRWYETVKS 421
F Y +VK W+E + S
Sbjct: 184 CASLFDAYPHVKAWWEGLMS 203
>12_01_0383 -
3006974-3007200,3007808-3007985,3008398-3008478,
3008583-3008822
Length = 241
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 213 GAPADKAKNEKVQEPFSCWTSSSKVRSTWPD 305
G+PA KAK E+ P T+SS+V WP+
Sbjct: 192 GSPAAKAKIEQQCPPPMTGTASSEVMRVWPN 222
>01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110
Length = 215
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 257 LQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASD--IDFKKYANVKRWY 406
L++ + L KY+AG ++VADLS +A L A+ Y +VK W+
Sbjct: 144 LEVYEARLTKCKYLAGDYISVADLSHVAGTVCLGATPHASVLDAYPHVKAWW 195
>01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188
Length = 216
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 257 LQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEAS--DIDFKKYANVKRWYETV 415
L++ + L KY+AG +++AD+S +V L AS + Y VK W + V
Sbjct: 144 LEVYEAQLSKSKYLAGDFISLADISHFPTVYYLLASAHASVLEAYPRVKAWIDDV 198
>07_01_1021 +
8736032-8736106,8736336-8736374,8737362-8737493,
8737848-8737892,8738450-8739157,8740679-8740807,
8741290-8741346,8742937-8742954
Length = 400
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -1
Query: 188 ITESLVQSSARAEFGTR*RSACTSCSCPRSSGSTRCVFNMWWTFRGLPHGTS 33
+T S+ S R G R R S + R + RC WW +RG G S
Sbjct: 132 MTASVTTLSGRGRRGARRRRR--SRAVGRRGAAVRCGDGFWWRWRGGTAGAS 181
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 266 LDKFLEGQKYVAGPNLTVADL---SLIASVSSLEASDIDFKKYANVKRWYETV 415
LD +L + ++ L++AD+ S +A S KKY N+ RW+ ++
Sbjct: 102 LDGYLASRTFLVSYGLSIADIVVWSNLAGTGQRWESLRRSKKYQNLVRWFNSI 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,278,613
Number of Sequences: 37544
Number of extensions: 305940
Number of successful extensions: 962
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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