Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30221
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 42   4e-04
SB_32584| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_18788| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_6223| Best HMM Match : Ras (HMM E-Value=0)                          29   3.8  
SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)                 29   3.8  
SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)                    28   6.6  
SB_5958| Best HMM Match : TrmB (HMM E-Value=1.4)                       27   8.7  
SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
 Frame = +2

Query: 257 LQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEAS--DIDFKKYANVKRWYETV--KST 424
           L  ++K L G+K++ G ++T+AD S+  S++ +  S  D D K Y N+  WY  +     
Sbjct: 127 LGFVEKHLAGRKFLVGDSVTIADFSVATSIAVILTSLGDEDRKPYQNIVSWYTALVESDN 186

Query: 425 APGYQEANEKGLEAFK 472
             G +E  ++  + FK
Sbjct: 187 TVGSKEFPKESHKPFK 202


>SB_32584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 138 VAVCMHFLFLSAFFWLNTMCF--QHVVDFPG 52
           VAV +HF  LSAF W+N + F   H    PG
Sbjct: 476 VAVSLHFALLSAFCWMNVLAFDVHHTFTKPG 506


>SB_18788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 820

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 138 VAVCMHFLFLSAFFWLNTMCFQHVVDFPGTSARNLAGN 25
           VA+ +H+ FL++F W+  M +  +  F     R+ + N
Sbjct: 532 VAIVIHYFFLASFGWMAVMAYDVMKTFTSKGVRSCSNN 569


>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1665

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -3

Query: 138  VAVCMHFLFLSAFFWLNTMCF 76
            +A+ +H+ FLS+F W++ + F
Sbjct: 1105 IAIALHYSFLSSFTWMSVIAF 1125


>SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)
          Length = 959

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 138 VAVCMHFLFLSAFFWLNTMCFQ--HVVDFPGTSA 43
           +A+ +H+ FL++F W++ + F       F G SA
Sbjct: 731 IAIVLHYAFLASFSWMSIIAFDTWRAFSFSGQSA 764


>SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1127

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -3

Query: 180 ISGTKFR-SCRIRHEVAVCMHFLFLSAFFWL 91
           I  T+++ +C+I   +A+ MH+LFL AF W+
Sbjct: 692 IDRTEYQVACKI---LAIAMHYLFLVAFAWM 719


>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 138 VAVCMHFLFLSAFFWLNTMCFQHVVDF 58
           VAV +H+  L+AF W++ M +  +  F
Sbjct: 893 VAVIVHYFLLAAFAWMSVMAYDVMKTF 919


>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
          Length = 2057

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 389  NVKRWYETVKSTAPGYQEANEKGLEAFKGLVNSMLKK*TLSTRNEN 526
            +V +W E ++  + GY    + GL+   G+V  + ++   S RNE+
Sbjct: 1574 DVTKWIELLQLESCGYDSTEQSGLDLLNGIVPQLKQQ---SYRNES 1616


>SB_5958| Best HMM Match : TrmB (HMM E-Value=1.4)
          Length = 191

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 181 NLWYKVPLVPNSARGSGLHAL-LVPVRVLLAQHDVFSTCGGLSG 53
           N+WYK+ L P     + L AL L  V     QH++F   G  +G
Sbjct: 144 NIWYKLKLPPEVIDRTFLSALQLEAVVYACQQHEIFLESGERAG 187


>SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +2

Query: 221 SRQGQEREGTGTLQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKK 382
           +R G E +G  T  + D++    +  + P+     ++ IAS       D DFKK
Sbjct: 155 TRSGAESDGGSTHSVTDQYPRKSRNRSAPSQISVVIANIASFEMTAEEDEDFKK 208


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,279,517
Number of Sequences: 59808
Number of extensions: 333388
Number of successful extensions: 1087
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)