Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30220
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 103 2e-22
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 101 4e-22
SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 0.90
SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 0.90
SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10) 31 0.90
SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 0.90
SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 0.90
SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065) 28 6.3
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23) 28 6.3
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029) 28 6.3
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 103 bits (246), Expect = 2e-22
Identities = 44/56 (78%), Positives = 51/56 (91%)
Frame = +2
Query: 509 FGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDD 676
FGA+KGAVDGGL +PHS+KRFPGYD+ESK F+AEVHR HIFG HVAEYMRSL ++D
Sbjct: 192 FGALKGAVDGGLEIPHSMKRFPGYDSESKDFSAEVHRNHIFGKHVAEYMRSLAEED 247
Score = 93.1 bits (221), Expect = 2e-19
Identities = 45/83 (54%), Positives = 51/83 (61%)
Frame = +3
Query: 255 VCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 434
+ +AY+HELP +GVKVGLTNYAAAY TG EYNVE
Sbjct: 107 LASAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVES 166
Query: 435 VDNGPGAFRCYLDVGLARTTTGA 503
VD PGAFRC+LDVGLART+TGA
Sbjct: 167 VDGSPGAFRCFLDVGLARTSTGA 189
Score = 78.6 bits (185), Expect = 5e-15
Identities = 31/42 (73%), Positives = 38/42 (90%)
Frame = +1
Query: 97 RRREGKTNYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 222
RR +GKT+YYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17 RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 101 bits (243), Expect = 4e-22
Identities = 48/83 (57%), Positives = 53/83 (63%)
Frame = +3
Query: 255 VCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 434
+CAAY+HELPRYGVKVGLTNYAAAY TG EYNVE
Sbjct: 12 ICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTEEVNGDEYNVES 71
Query: 435 VDNGPGAFRCYLDVGLARTTTGA 503
+D PGAFRC+LDVGLART+TGA
Sbjct: 72 IDGSPGAFRCFLDVGLARTSTGA 94
Score = 35.1 bits (77), Expect = 0.055
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +2
Query: 509 FGAMKGAVDGGLNVPH 556
FGA+KGAVDGGL +PH
Sbjct: 97 FGALKGAVDGGLEIPH 112
>SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1379
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 601 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 479
+ FGF + E D MR + +T++S APV++R K
Sbjct: 564 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 604
>SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 266
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 601 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 479
+ FGF + E D MR + +T++S APV++R K
Sbjct: 43 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83
>SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 266
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 601 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 479
+ FGF + E D MR + +T++S APV++R K
Sbjct: 43 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83
>SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 601 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 479
+ FGF + E D MR + +T++S APV++R K
Sbjct: 43 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83
>SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)
Length = 475
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 601 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 479
+ FGF + E D MR + +T++S APV++R K
Sbjct: 365 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 405
>SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 780
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 601 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 479
+ FGF + E D MR + +T++S APV++R K
Sbjct: 212 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 252
>SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1244
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 601 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 479
+ FGF + E D MR + +T++S APV++R K
Sbjct: 881 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 921
>SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1515
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 601 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 479
+ FGF + E D MR + +T++S APV++R K
Sbjct: 1159 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 1199
>SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)
Length = 557
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -3
Query: 372 QVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTHMVTFNPRVGHLACYIF 205
++ + ++L D ++ L PS A+ +NKQ T V+F P G LA F
Sbjct: 180 KIRQTEWMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVSFKPDPGALAVDTF 235
>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
Length = 232
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 120 ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYK 13
ISFPFTT E Y +V F+ N LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154
>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
Length = 1769
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -3
Query: 372 QVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTHMVTFNPRVGHLACYIF 205
++ + ++L D ++ L PS A+ +NKQ T V+F P G LA F
Sbjct: 340 KIRQTEWMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVSFKPDPGALAVDTF 395
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,980,249
Number of Sequences: 59808
Number of extensions: 463093
Number of successful extensions: 1266
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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