Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30220
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    25   0.52 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    25   0.52 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.5  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   8.5  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   8.5  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   8.5  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   8.5  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   8.5  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   8.5  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 55  KNKQYFKRYQVKFKRRREGKTNYYARKRLVVQDKNKYNTPKY 180
           KN++ +++Y+   K R   +T     K   +   N YN   Y
Sbjct: 273 KNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNY 314


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 55  KNKQYFKRYQVKFKRRREGKTNYYARKRLVVQDKNKYNTPKY 180
           KN++ +++Y+   K R   +T     K   +   N YN   Y
Sbjct: 284 KNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNY 325


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 522 FIAPKHEHQ 496
           F+ PKH+HQ
Sbjct: 538 FLGPKHDHQ 546


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 493 LLVLVFWSYEGCC*RWPQCSSFHQK 567
           LL+   WS       W  CSSF Q+
Sbjct: 401 LLLDADWSVNAGMWMWLSCSSFFQQ 425


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 115 TNYYARKRLVVQDKNKYNTPKYRLIVRLSNK 207
           +++Y+R+R   +D+N+    K R   +L N+
Sbjct: 228 SSHYSRERSCSRDRNREYRKKDRRYEKLHNE 258


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 115 TNYYARKRLVVQDKNKYNTPKYRLIVRLSNK 207
           +++Y+R+R   +D+N+    K R   +L N+
Sbjct: 228 SSHYSRERSCSRDRNREYRKKDRRYEKLHNE 258


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 115 TNYYARKRLVVQDKNKYNTPKYRLIVRLSNK 207
           +++Y+R+R   +D+N+    K R   +L N+
Sbjct: 228 SSHYSRERSCSRDRNREYRKKDRRYEKLHNE 258


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 115 TNYYARKRLVVQDKNKYNTPKYRLIVRLSNK 207
           +++Y+R+R   +D+N+    K R   +L N+
Sbjct: 228 SSHYSRERSCSRDRNREYRKKDRRYEKLHNE 258


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 115 TNYYARKRLVVQDKNKYNTPKYRLIVRLSNK 207
           +++Y+R+R   +D+N+    K R   +L N+
Sbjct: 217 SSHYSRERSCSRDRNREYRKKDRRYEKLHNE 247


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 115 TNYYARKRLVVQDKNKYNTPKYRLIVRLSNK 207
           +++Y+R+R   +D+N+    K R   +L N+
Sbjct: 228 SSHYSRERSCSRDRNREYKEKDRRYEKLHNE 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,639
Number of Sequences: 438
Number of extensions: 4261
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)