Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30220
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S... 104 7e-23
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso... 103 1e-22
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr... 27 9.0
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr... 27 9.0
At4g18020.3 68417.m02683 pseudo-response regulator 2 (APRR2) (TO... 27 9.0
At4g18020.2 68417.m02682 pseudo-response regulator 2 (APRR2) (TO... 27 9.0
At4g18020.1 68417.m02681 pseudo-response regulator 2 (APRR2) (TO... 27 9.0
At1g51800.1 68414.m05837 leucine-rich repeat protein kinase, put... 27 9.0
>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
ribosomal protein L5 GB:P49625 from [Oryza sativa]
Length = 301
Score = 104 bits (249), Expect = 7e-23
Identities = 46/72 (63%), Positives = 56/72 (77%)
Frame = +1
Query: 34 MGFVKVVKNKQYFKRYQVKFKRRREGKTNYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 213
M FVK K+ YFKRYQVKF+RRR+GKT+Y AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1 MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
Query: 214 TCQVAYSRIEGD 249
Q+ + I GD
Sbjct: 61 VAQIVSASIAGD 72
Score = 77.4 bits (182), Expect = 9e-15
Identities = 31/56 (55%), Positives = 46/56 (82%)
Frame = +2
Query: 509 FGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDD 676
FGA+KGA+DGGL++PHS KRF G+ E+K+ +AE+HR +I+G HV+ YM+ L +D+
Sbjct: 159 FGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDE 214
Score = 67.7 bits (158), Expect = 7e-12
Identities = 36/80 (45%), Positives = 44/80 (55%)
Frame = +3
Query: 261 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 440
+AY+HELP+YG+ VGLTNYAAAY TG +++VEP D
Sbjct: 77 SAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTD 136
Query: 441 NGPGAFRCYLDVGLARTTTG 500
+ FR LDVGL RTTTG
Sbjct: 137 S-RRPFRALLDVGLIRTTTG 155
>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
protein L5, rice
Length = 301
Score = 103 bits (247), Expect = 1e-22
Identities = 46/72 (63%), Positives = 56/72 (77%)
Frame = +1
Query: 34 MGFVKVVKNKQYFKRYQVKFKRRREGKTNYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 213
M FVK K+ YFKRYQVKF+RRR+GKT+Y AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1 MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
Query: 214 TCQVAYSRIEGD 249
Q+ + I GD
Sbjct: 61 VAQIVSASIAGD 72
Score = 77.4 bits (182), Expect = 9e-15
Identities = 31/56 (55%), Positives = 46/56 (82%)
Frame = +2
Query: 509 FGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDD 676
FGA+KGA+DGGL++PHS KRF G+ E+K+ +AE+HR +I+G HV+ YM+ L +D+
Sbjct: 159 FGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDE 214
Score = 67.7 bits (158), Expect = 7e-12
Identities = 36/80 (45%), Positives = 44/80 (55%)
Frame = +3
Query: 261 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 440
+AY+HELP+YG+ VGLTNYAAAY TG +++VEP D
Sbjct: 77 SAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTD 136
Query: 441 NGPGAFRCYLDVGLARTTTG 500
+ FR LDVGL RTTTG
Sbjct: 137 S-RRPFRALLDVGLIRTTTG 155
>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 302
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = +1
Query: 52 VKNKQYFKRYQVKFKRRREGKTNYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 225
VKN + + ++ KR+ EGKT +K++ +D+ + P + +SN + + ++
Sbjct: 79 VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133
>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 304
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = +1
Query: 52 VKNKQYFKRYQVKFKRRREGKTNYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 225
VKN + + ++ KR+ EGKT +K++ +D+ + P + +SN + + ++
Sbjct: 79 VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133
>At4g18020.3 68417.m02683 pseudo-response regulator 2 (APRR2) (TOC2)
identical to pseudo-response regulator 2 GI:7576356 from
[Arabidopsis thaliana]
Length = 487
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 297 SHHNVATHVNKQRTHMVTFNPRVGHLACYIFVGETH 190
+ HNVA+H+ K R H P+ H +I E H
Sbjct: 336 TRHNVASHLQKFRQHRKNILPKDDHNHRWIQSRENH 371
>At4g18020.2 68417.m02682 pseudo-response regulator 2 (APRR2) (TOC2)
identical to pseudo-response regulator 2 GI:7576356 from
[Arabidopsis thaliana]
Length = 535
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 297 SHHNVATHVNKQRTHMVTFNPRVGHLACYIFVGETH 190
+ HNVA+H+ K R H P+ H +I E H
Sbjct: 336 TRHNVASHLQKFRQHRKNILPKDDHNHRWIQSRENH 371
>At4g18020.1 68417.m02681 pseudo-response regulator 2 (APRR2) (TOC2)
identical to pseudo-response regulator 2 GI:7576356 from
[Arabidopsis thaliana]
Length = 535
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 297 SHHNVATHVNKQRTHMVTFNPRVGHLACYIFVGETH 190
+ HNVA+H+ K R H P+ H +I E H
Sbjct: 336 TRHNVASHLQKFRQHRKNILPKDDHNHRWIQSRENH 371
>At1g51800.1 68414.m05837 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 894
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 184 LIVRLSNKDVTCQVAYSRIEGDHMCALLIHMS 279
L++R+ +KD+TC V Y EGD M + M+
Sbjct: 632 LLLRVHHKDLTCLVGYCE-EGDKMSLIYEFMA 662
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,124,544
Number of Sequences: 28952
Number of extensions: 308018
Number of successful extensions: 682
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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