Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30219
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0935 + 7216044-7216297,7216311-7216388,7216424-7216634           28   6.2  

>06_01_0935 + 7216044-7216297,7216311-7216388,7216424-7216634
          Length = 180

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +1

Query: 70  KIKTPLRSNATNILQCYIEPINHITLTLAVKKKN*CNTSKE---KRKKKSAAICHSLSTM 240
           KI +P+ S+  NIL        H      +K+    N+ KE   K+K K A + HS S +
Sbjct: 85  KISSPVASSEANILSVAYSEAFH-----TLKRYKLLNSGKENVYKKKVKEADVVHSFSEI 139

Query: 241 TKNRN 255
            + +N
Sbjct: 140 AEYKN 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,795,145
Number of Sequences: 37544
Number of extensions: 223393
Number of successful extensions: 460
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)