Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30219
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)                    31   0.68 
SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_56553| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8)                    29   4.8  
SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)         28   8.4  
SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)
          Length = 885

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 520 FLKQWRIFLEASTKVTGADLLAIP 591
           F+K+ RI+LE S K+ G D+L +P
Sbjct: 152 FIKKMRIYLEISRKLNGPDVLCVP 175


>SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = -3

Query: 378 GFSTFELFGRIRNSKCGNLTMTIVLVALTGDYRDQTDETIGISVFRHCRKRMTNC 214
           G  TF+++  IR +K  +L  + +L   +   R + D+   +   R CR+R+TNC
Sbjct: 37  GTLTFDMWQNIR-AKLLSLAASRILKRESHPIRTRVDQDSPVENPRCCRRRITNC 90


>SB_56553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 88  RSNATNILQCYIEPINHITLTLAVK 162
           R N+ NILQC +    H TL++ +K
Sbjct: 17  RRNSVNILQCMLSDSKHQTLSVVIK 41


>SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8)
          Length = 411

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +1

Query: 169 N*CNTSKEKRKKKSAAICHSLSTM--TKNRNSYCLIGLVPIITCQRD*NYCHRE 324
           N  +TS  K  K   +I H+ +    T+N+N  C     P + C R  + C RE
Sbjct: 74  NFSDTSSLKLLKTKGSIGHAFTVCIHTENQNQMCRPSQTPNLQCLRHGSVCKRE 127


>SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1364

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 13  NYRKNKARVDARDT*TVNNKIKTPLRSNATNILQCYIEPIN 135
           NY KN+A  D  +    + ++   +R N   ++  Y+ PIN
Sbjct: 136 NYHKNRAEDDPMNRWCAHVRVAVAMRINYPKMIYYYLSPIN 176


>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
          Length = 1052

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 13  NYRKNKARVDARDT*TVNNKIKTPLRSNATNILQCYIEPIN 135
           NYRKN+AR D  +    + +     R N    ++ Y+ PIN
Sbjct: 164 NYRKNRARDDPMNRWCAHVREAVAKRINYPEKIKYYLSPIN 204


>SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1471

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 495  SED*MFSKFFKTMAYISGSVD*SDRC*FVSDSSD 596
            S+D    +  +T+ Y+ GS   SD C F++DS D
Sbjct: 1039 SQDSSHDEGLQTVGYVCGSRPLSDLCLFIADSVD 1072


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,848,696
Number of Sequences: 59808
Number of extensions: 286980
Number of successful extensions: 683
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)