Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30218
         (701 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q17249 Cluster: Urbain; n=1; Bombyx mori|Rep: Urbain - ...   120   3e-26
UniRef50_A5PMR7 Cluster: Novel pim oncogene family protein; n=25...    36   0.96 
UniRef50_Q8X0H2 Cluster: Putative uncharacterized protein B13O8....    35   1.7  
UniRef50_A6WGA1 Cluster: Putative uncharacterized protein; n=1; ...    33   6.8  
UniRef50_A4APV2 Cluster: Transmembrane protein, putative; n=1; F...    33   6.8  
UniRef50_A5E618 Cluster: Putative uncharacterized protein; n=1; ...    33   9.0  

>UniRef50_Q17249 Cluster: Urbain; n=1; Bombyx mori|Rep: Urbain -
           Bombyx mori (Silk moth)
          Length = 551

 Score =  120 bits (289), Expect = 3e-26
 Identities = 60/85 (70%), Positives = 60/85 (70%)
 Frame = +3

Query: 255 QRPAPWQNLPSQIXXXXXXXXXXXXXXXXXXXXXXXXXGLFSGVQNFPFNFLNLLQPNRP 434
           QRPAPWQNLPSQI                         GLFSGVQNFPFNFLNLLQPNRP
Sbjct: 343 QRPAPWQNLPSQISNFFNPQGQNSNQQNQSGQQSQAPSGLFSGVQNFPFNFLNLLQPNRP 402

Query: 435 GAQSTEKPAEATSTTGVASAAPDIA 509
           GAQSTEKPAEATSTTGVASAAPDIA
Sbjct: 403 GAQSTEKPAEATSTTGVASAAPDIA 427



 Score =  104 bits (249), Expect = 2e-21
 Identities = 46/48 (95%), Positives = 47/48 (97%)
 Frame = +2

Query: 65  NGPTNPLIQMVTNLQNSFLSGMANLTQAINNWNSNQAWSVPNIFGGVA 208
           NGPTNPLIQMVTNLQNSFLSGMANLTQAINNWNSNQAWSVPNIFGG +
Sbjct: 279 NGPTNPLIQMVTNLQNSFLSGMANLTQAINNWNSNQAWSVPNIFGGAS 326



 Score = 83.4 bits (197), Expect = 5e-15
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = +2

Query: 509 KPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAV 622
           KPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAV
Sbjct: 428 KPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAV 465



 Score = 50.8 bits (116), Expect = 3e-05
 Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 12/171 (7%)
 Frame = +1

Query: 193 FWRSSTAAPQSDVQGDATTTTRDLRRGKICRRK*ATFLIPRDKTVTNKTRAVNSRRRLLV 372
           F  +STAAPQSDVQGDATTTT+     +    + + F  P+ +    + ++    +    
Sbjct: 322 FGGASTAAPQSDVQGDATTTTQRPAPWQNLPSQISNFFNPQGQNSNQQNQSGQQSQAPSG 381

Query: 373 SFLVYKIFHLTS*TSYNQIGLVLSLLRNPLKRPVRPESRVPLQTLQTI*VKSAH*NKTRT 552
            F   + F       +N     L+LL+    RP    +  P +   T  V SA  +  + 
Sbjct: 382 LFSGVQNF------PFN----FLNLLQP--NRPGAQSTEKPAEATSTTGVASAAPDIAKP 429

Query: 553 TRSRAIKTNFREQPSSARHRR------------SSLKKIQTTVNNPVKPRD 669
           + S        EQP++   ++             ++KKIQTTVNNPVKPRD
Sbjct: 430 SESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRD 480


>UniRef50_A5PMR7 Cluster: Novel pim oncogene family protein; n=25;
           Danio rerio|Rep: Novel pim oncogene family protein -
           Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 865

 Score = 35.9 bits (79), Expect = 0.96
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 479 RSRECRSRHCKPSESNPPTETKPEQPAAGP 568
           ++ +CR R CK S   PP++T+P  P  GP
Sbjct: 54  KASQCRRRDCKVSPLQPPSDTEPPGPQPGP 83


>UniRef50_Q8X0H2 Cluster: Putative uncharacterized protein
           B13O8.040; n=2; Fungi/Metazoa group|Rep: Putative
           uncharacterized protein B13O8.040 - Neurospora crassa
          Length = 1750

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +2

Query: 77  NPLIQMVTNLQNSFLSGMANLTQAINNWNSNQAWSVPNIFGGVALQPLSQMFKATQPP 250
           N  ++ V+    +  S  AN T A ++ NSN   S  +  GG A +P + M K++QPP
Sbjct: 733 NGTVEAVSGSNKNTNSNSANKTNASSSRNSNPGRSGKSNQGGSARKPSNAMAKSSQPP 790


>UniRef50_A6WGA1 Cluster: Putative uncharacterized protein; n=1;
           Kineococcus radiotolerans SRS30216|Rep: Putative
           uncharacterized protein - Kineococcus radiotolerans
           SRS30216
          Length = 502

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 205 STAAPQSDVQGDATTTTRDLRRGKICRRK*ATFLIPRDKTVTNKTRAVNSRRR 363
           +TAA       D+T T    R  K+  +K     +P  KTVT KT A  + +R
Sbjct: 444 TTAATGGLAAADSTVTKATARTAKVTAKKSTAVEVPARKTVTKKTAAKTTTKR 496


>UniRef50_A4APV2 Cluster: Transmembrane protein, putative; n=1;
           Flavobacteriales bacterium HTCC2170|Rep: Transmembrane
           protein, putative - Flavobacteriales bacterium HTCC2170
          Length = 1230

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +2

Query: 65  NGPTNPLIQMVTNLQNSFLSGMANLTQAINNWNSNQAWSVPNIFGG 202
           N   NP + +VTN+ NS  +  ++L Q IN+W+ +   ++  +F G
Sbjct: 654 NASDNPDLSLVTNM-NSMFNSCSSLNQIINSWDVSAVTTMNGMFFG 698


>UniRef50_A5E618 Cluster: Putative uncharacterized protein; n=1;
            Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
            uncharacterized protein - Lodderomyces elongisporus
            (Yeast) (Saccharomyces elongisporus)
          Length = 1911

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 167  NQAWSVPNIFGGVALQPLSQMFKATQPPQPETCAV 271
            +QA + P++    A  PLS +  +TQPP P+T ++
Sbjct: 980  SQASATPSLKSSTARPPLSPLLVSTQPPPPKTASI 1014


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 711,959,595
Number of Sequences: 1657284
Number of extensions: 14753062
Number of successful extensions: 47103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47079
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)