Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30218
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    28   1.1  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    27   2.0  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    27   3.4  
SPAC3A12.04c |||RNase P and RNase MRP subunit p30 |Schizosacchar...    26   6.0  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    25   7.9  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   7.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   7.9  

>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +2

Query: 149 INNWNSNQAWSVPNI--FGGVALQPLSQMF 232
           I  WN  + WS P I  FG +   P S +F
Sbjct: 47  IMKWNREKGWSTPEIVPFGKLCFHPASSVF 76


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 512 PSESNPPTETKPEQP 556
           P   NPPTE++PE+P
Sbjct: 197 PPRENPPTESQPEKP 211


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 682 THFRNLLASLDY*LLFGFFL 623
           THFRN+LA     L  GFFL
Sbjct: 50  THFRNMLAMFGNFLSLGFFL 69


>SPAC3A12.04c |||RNase P and RNase MRP subunit p30
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/43 (23%), Positives = 26/43 (60%)
 Frame = +1

Query: 415 SYNQIGLVLSLLRNPLKRPVRPESRVPLQTLQTI*VKSAH*NK 543
           +Y   G + ++++NP+ + + PE ++ + +  T+ ++S   NK
Sbjct: 37  NYQYDGKLQNVIKNPIVKELYPEQKIKIYSRITLTIESMPQNK 79


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 538 NKTRTTRSRAIKTNFREQPSSARHRRSSLKKIQTTVNNPVKP 663
           NK  T  + A   N R+ PSS     S +K +     N +KP
Sbjct: 125 NKKATALANASVQNERQMPSSMTLDNSEIKPVLNQRKNYLKP 166


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 444 STEKPAEATSTTGVASAAPDIANH 515
           +T KP E TSTT  A++AP ++N+
Sbjct: 337 NTSKPTENTSTT--ATSAPPLSNN 358


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 148  NQQLELEPSMEC-SKYFWRSSTAAPQSDVQ 234
            N+    +P   C S+ +W +STA P+S VQ
Sbjct: 1359 NESFSAKPVEPCASEKWWLNSTAVPKSVVQ 1388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,543
Number of Sequences: 5004
Number of extensions: 59195
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)