Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30218
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 32 0.38
05_04_0059 - 17570271-17571190,17571394-17571469,17571645-17571671 29 4.7
03_06_0741 + 35893538-35895600,35896274-35896474,35896701-358968... 29 4.7
02_05_0442 - 29044736-29046604 29 4.7
02_01_0620 + 4650572-4650671,4650755-4650891,4651012-4651205,465... 29 4.7
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 29 4.7
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 28 6.2
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 28 6.2
07_03_0072 - 13051145-13052362 28 8.3
06_01_1013 - 7931756-7935109 28 8.3
02_05_0078 - 25656695-25656888,25656941-25657127,25657765-256580... 28 8.3
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 32.3 bits (70), Expect = 0.38
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 382 PEKRPEGACDC*PLWFC 332
PEKRP+ CDC P W C
Sbjct: 602 PEKRPKMTCDCWPSWCC 618
>05_04_0059 - 17570271-17571190,17571394-17571469,17571645-17571671
Length = 340
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +3
Query: 432 PGAQSTEKPAEATSTTGVASAAPDIANHLSQIRP 533
P Q EK EAT T A+AA NH S P
Sbjct: 190 PQQQKEEKAGEATMATAAAAAASTQGNHTSHHFP 223
>03_06_0741 +
35893538-35895600,35896274-35896474,35896701-35896814,
35897570-35897649,35897772-35897896,35898008-35898079
Length = 884
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 405 FLNLLQPNR-PGAQSTEKPAEATSTTGVASAAPDIANHLSQI 527
FL L P + PG + KP+ A ST+ +S++P +A L +
Sbjct: 13 FLFLSPPGKLPGGKPRLKPSCAASTSSSSSSSPSLAEQLEPL 54
>02_05_0442 - 29044736-29046604
Length = 622
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +1
Query: 460 LKRPVRPESRVPLQTLQTI*VKSAH*NKTRTTRSRAIKTNFREQPSSARHRR 615
L P+ +R P QT Q A KT+TTR+ TN R PS +R RR
Sbjct: 42 LTSPLVTTTRTPKQTEQEDEQLVA---KTKTTRTVIATTNGRAAPSQSRPRR 90
>02_01_0620 +
4650572-4650671,4650755-4650891,4651012-4651205,
4651287-4651571,4652111-4652169,4652469-4652540,
4652817-4652925,4653239-4653980
Length = 565
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -2
Query: 64 GACYCRSCC-ALSRGGTGTFSC 2
G C+C CC SRGG G++SC
Sbjct: 107 GCCFC--CCPGSSRGGGGSYSC 126
>01_07_0290 -
42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 175 CLVRVPVVDCLSEISHSGQE*ILEVGHHL 89
CL R+ + DC +EIS Q+ + HHL
Sbjct: 873 CLRRIKLEDCTTEISIKYQQQATQAAHHL 901
>06_01_0474 -
3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -2
Query: 232 EHLTEGLQCYSAKNIWNTPCLVRVPVVDCLSEISHSGQE*ILEVGHHLN*RICRAIGACY 53
+HL+E +C+ A W P L VP+ + + S + V H+ RI R GA
Sbjct: 725 QHLSEAWRCWKANIPWKVPGL-PVPIENMILRYVKSKADWWTNVAHYNRERIRR--GATV 781
Query: 52 CRSCCALSRG 23
++ C + G
Sbjct: 782 DKTVCRKNLG 791
>05_01_0460 -
3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -2
Query: 232 EHLTEGLQCYSAKNIWNTPCLVRVPVVDCLSEISHSGQE*ILEVGHHLN*RICRAIGACY 53
+HL+E +C+ A W P L VP+ + + S + V H+ RI R GA
Sbjct: 725 QHLSEAWRCWKANIPWKVPGL-PVPIENMILRYVKSKADWWTNVAHYNRERIRR--GATV 781
Query: 52 CRSCCALSRG 23
++ C + G
Sbjct: 782 DKTVCRKNLG 791
>07_03_0072 - 13051145-13052362
Length = 405
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 286 RK*ATFLIPRDKTVTNKTRAVNSRRRL 366
R+ TFL+PR + R NSRRR+
Sbjct: 51 RQAMTFLLPRQHEFKQRLRGANSRRRM 77
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -3
Query: 609 MPCRTGLFSKICFNGPAAGCSGFVSVGGF 523
+PCR K+C GP C+ +S F
Sbjct: 321 LPCRRHRCEKVCHTGPCGDCNVLISARCF 349
>02_05_0078 -
25656695-25656888,25656941-25657127,25657765-25658067,
25658152-25658296,25658376-25658613,25658694-25658904,
25659060-25659175,25659420-25659468
Length = 480
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 181 CSKYFWRSSTAAPQSDVQGDATTTTRDLRR 270
C +Y WR AAP+ V G +T + R
Sbjct: 368 CCRYLWRLDLAAPKLAVAGSGRSTPEHMGR 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,762,192
Number of Sequences: 37544
Number of extensions: 430580
Number of successful extensions: 1367
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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